Back to Multiple platform build/check report for BioC 3.15
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-11-25 14:04:49 -0500 (Thu, 25 Nov 2021).

INSTALL results for bnbc on riesling1

To the developers/maintainers of the bnbc package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bnbc.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 203/2068HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bnbc 1.17.1  (landing page)
Kipper Fletez-Brant
Snapshot Date: 2021-11-24 14:50:13 -0500 (Wed, 24 Nov 2021)
git_url: https://git.bioconductor.org/packages/bnbc
git_branch: master
git_last_commit: b299f60
git_last_commit_date: 2021-11-20 23:13:42 -0500 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: bnbc
Version: 1.17.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/bnbc_1.17.1.tar.gz && rm -rf bnbc.buildbin-libdir && mkdir bnbc.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bnbc.buildbin-libdir bnbc_1.17.1.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL bnbc_1.17.1.zip && rm bnbc_1.17.1.tar.gz bnbc_1.17.1.zip
StartedAt: 2021-11-24 18:19:42 -0500 (Wed, 24 Nov 2021)
EndedAt: 2021-11-24 18:22:48 -0500 (Wed, 24 Nov 2021)
EllapsedTime: 185.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/bnbc_1.17.1.tar.gz && rm -rf bnbc.buildbin-libdir && mkdir bnbc.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bnbc.buildbin-libdir bnbc_1.17.1.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL bnbc_1.17.1.zip && rm bnbc_1.17.1.tar.gz bnbc_1.17.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  6 3140k    6  196k    0     0   918k      0  0:00:03 --:--:--  0:00:03  913k
100 3140k  100 3140k    0     0  4984k      0 --:--:-- --:--:-- --:--:-- 4976k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'bnbc' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c update_bands.cpp -o update_bands.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o bnbc.dll tmp.def RcppExports.o update_bands.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/bnbc.buildbin-libdir/00LOCK-bnbc/00new/bnbc/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bnbc'
    finding HTML links ... done
    ContactGroup-class                      html  
    apply_functions                         html  
    band                                    html  
    bnbc-package                            html  
    bnbc                                    html  
    cgEx                                    html  
    cooler_methods                          html  
    getBandIdx                              html  
    getBandMatrix                           html  
    groupZeros                              html  
    smoothing                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'bnbc' as bnbc_1.17.1.zip
* DONE (bnbc)
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
package 'bnbc' successfully unpacked and MD5 sums checked