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This page was generated on 2022-12-07 11:05:21 -0500 (Wed, 07 Dec 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4423
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-11-30 r83393 ucrt) -- "Unsuffered Consequences" 4193
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4236
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for biomvRCNS on nebbiolo1


To the developers/maintainers of the biomvRCNS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biomvRCNS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 192/2155HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomvRCNS 1.39.0  (landing page)
Yang Du
Snapshot Date: 2022-12-06 14:00:17 -0500 (Tue, 06 Dec 2022)
git_url: https://git.bioconductor.org/packages/biomvRCNS
git_branch: master
git_last_commit: 7e36203
git_last_commit_date: 2022-11-01 11:07:53 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: biomvRCNS
Version: 1.39.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL biomvRCNS
StartedAt: 2022-12-06 15:44:49 -0500 (Tue, 06 Dec 2022)
EndedAt: 2022-12-06 15:44:50 -0500 (Tue, 06 Dec 2022)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL biomvRCNS
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘biomvRCNS’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c biomvRCNS.c -o biomvRCNS.o
biomvRCNS.c: In function ‘forward’:
biomvRCNS.c:153:43: error: ‘DOUBLE_XMIN’ undeclared (first use in this function); did you mean ‘DBL_MIN’?
  153 |                         m_e(F, t, j, T)+= DOUBLE_XMIN;
      |                                           ^~~~~~~~~~~
      |                                           DBL_MIN
biomvRCNS.c:153:43: note: each undeclared identifier is reported only once for each function it appears in
biomvRCNS.c: In function ‘viterbi’:
biomvRCNS.c:294:36: error: ‘DOUBLE_XMAX’ undeclared (first use in this function); did you mean ‘DBL_MAX’?
  294 |         double obs, prod, maxprod=-DOUBLE_XMAX;
      |                                    ^~~~~~~~~~~
      |                                    DBL_MAX
biomvRCNS.c: In function ‘logviterbi’:
biomvRCNS.c:401:36: error: ‘DOUBLE_XMAX’ undeclared (first use in this function); did you mean ‘DBL_MAX’?
  401 |         double obs, prod, maxprod=-DOUBLE_XMAX;
      |                                    ^~~~~~~~~~~
      |                                    DBL_MAX
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:176: biomvRCNS.o] Error 1
ERROR: compilation failed for package ‘biomvRCNS’
* removing ‘/home/biocbuild/bbs-3.17-bioc/R/library/biomvRCNS’