############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR ### ############################################################################## ############################################################################## * checking for file ‘bioassayR/DESCRIPTION’ ... OK * preparing ‘bioassayR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘bioassayR.Rmd’ using rmarkdown Quitting from lines at lines 30-37 [setup] (bioassayR.Rmd) Error: processing vignette 'bioassayR.Rmd' failed with diagnostics: there is no package called 'cellHTS2' --- failed re-building ‘bioassayR.Rmd’ #"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitr); knit2html('bioassayR.Rmd',options=c('toc',markdown::markdownHTMLOptions(TRUE)))" #"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitr); knit('bioassayR.Rmd')" #pandoc --self-contained --output bioassayR.html -H header.html --from markdown --smart --table-of-contents --template html.template bioassayR.md; #"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitrBootstrap); knit_bootstrap('bioassayR.Rmd',show_code=TRUE)" "/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(rmarkdown); library(BiocStyle); rmarkdown::render('bioassayR.Rmd')" Attaching package: ‘BiocStyle’ The following objects are masked from ‘package:rmarkdown’: html_document, md_document, pdf_document processing file: bioassayR.Rmd 1/143 2/143 [style] 3/143 4/143 [setup] Quitting from lines at lines 30-37 [setup] (bioassayR.Rmd) Error in `library()`: ! there is no package called 'cellHTS2' Backtrace: 1. base::suppressPackageStartupMessages(...) 3. base::library(cellHTS2) Execution halted make: *** [all] Error 1 Error in tools::buildVignettes(dir = ".", tangle = TRUE) : running 'make' failed Execution halted