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This page was generated on 2022-01-20 11:06:46 -0500 (Thu, 20 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4162
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4057
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3999
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4116
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for banocc on riesling1


To the developers/maintainers of the banocc package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/banocc.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 110/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
banocc 1.19.0  (landing page)
George Weingart
Snapshot Date: 2022-01-19 13:55:26 -0500 (Wed, 19 Jan 2022)
git_url: https://git.bioconductor.org/packages/banocc
git_branch: master
git_last_commit: 3e68a36
git_last_commit_date: 2021-10-26 12:34:28 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: banocc
Version: 1.19.0
Command: chmod a+r banocc -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data banocc
StartedAt: 2022-01-19 16:16:06 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 16:16:53 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 47.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r banocc -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data banocc
###
##############################################################################
##############################################################################


* checking for file 'banocc/DESCRIPTION' ... OK
* preparing 'banocc':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'banocc-vignette.Rmd' using rmarkdown
DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: P * P - 1 / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

make cmd is
  make -f "D:/biocbuild/bbs-3.15-bioc/R/etc/x64/Makeconf" -f "D:/biocbuild/bbs-3.15-bioc/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file33f445dc488.dll" WIN=64 TCLBIN=64 OBJECTS="file33f445dc488.o"

make would use
if test "zfile33f445dc488.o" != "z"; then \
  if test -e "file33f445dc488-win.def"; then \
    echo "C:/rtools40/mingw64/bin/"g++  -shared -s -static-libgcc -o file33f445dc488.dll file33f445dc488-win.def file33f445dc488.o  -L"C:/extsoft/lib/x64" -L"C:/extsoft/lib"  -L"D:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
    "C:/rtools40/mingw64/bin/"g++  -shared -s -static-libgcc -o file33f445dc488.dll file33f445dc488-win.def file33f445dc488.o  -L"C:/extsoft/lib/x64" -L"C:/extsoft/lib"  -L"D:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
  else \
    echo EXPORTS > tmp.def; \
    "C:/rtools40/mingw64/bin/"nm file33f445dc488.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g'  >> tmp.def; \
    echo "C:/rtools40/mingw64/bin/"g++  -shared -s -static-libgcc -o file33f445dc488.dll tmp.def file33f445dc488.o  -L"C:/extsoft/lib/x64" -L"C:/extsoft/lib"  -L"D:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
    "C:/rtools40/mingw64/bin/"g++  -shared -s -static-libgcc -o file33f445dc488.dll tmp.def file33f445dc488.o  -L"C:/extsoft/lib/x64" -L"C:/extsoft/lib"  -L"D:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
    rm -f tmp.def; \
  fi \
fi
Quitting from lines 138-142 (banocc-vignette.Rmd) 
Quitting from lines 138-142 (banocc-vignette.Rmd) 
Error: processing vignette 'banocc-vignette.Rmd' failed with diagnostics:
invalid connection
--- failed re-building 'banocc-vignette.Rmd'

SUMMARY: processing the following file failed:
  'banocc-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted