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This page was generated on 2021-11-30 13:54:44 -0500 (Tue, 30 Nov 2021).

INSTALL results for ballgown on riesling1

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raw results

Package 106/2068HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ballgown 2.27.1  (landing page)
Jack Fu
Snapshot Date: 2021-11-29 14:50:17 -0500 (Mon, 29 Nov 2021)
git_url: https://git.bioconductor.org/packages/ballgown
git_branch: master
git_last_commit: 1fbcd5f
git_last_commit_date: 2021-11-20 23:00:17 -0500 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ballgown
Version: 2.27.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/ballgown_2.27.1.tar.gz && rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ballgown.buildbin-libdir ballgown_2.27.1.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ballgown_2.27.1.zip && rm ballgown_2.27.1.tar.gz ballgown_2.27.1.zip
StartedAt: 2021-11-29 19:19:41 -0500 (Mon, 29 Nov 2021)
EndedAt: 2021-11-29 19:22:38 -0500 (Mon, 29 Nov 2021)
EllapsedTime: 176.6 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/ballgown_2.27.1.tar.gz && rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ballgown.buildbin-libdir ballgown_2.27.1.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ballgown_2.27.1.zip && rm ballgown_2.27.1.tar.gz ballgown_2.27.1.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 40 3312k   40 1351k    0     0  2821k      0  0:00:01 --:--:--  0:00:01 2815k
100 3312k  100 3312k    0     0  3764k      0 --:--:-- --:--:-- --:--:-- 3759k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'ballgown' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'structure' in package 'ballgown'
** help
*** installing help indices
  converting help for package 'ballgown'
    finding HTML links ... done
    annotate_assembly                       html  
    ballgown-class                          html  
    ballgown-constructor                    html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/ballgown.buildbin-libdir/00LOCK-ballgown/00new/ballgown/help/ballgown.html
    ballgown-package                        html  
    ballgownrsem                            html  
    bg                                      html  
    checkAssembledTx                        html  
    clusterTranscripts                      html  
    collapseTranscripts                     html  
    contains                                html  
    dirs                                    html  
    eexpr                                   html  
    expr-replace                            html  
    expr                                    html  
    exprfilter                              html  
    geneIDs                                 html  
    geneNames                               html  
    getAttributeField                       html  
    getGenes                                html  
    gexpr                                   html  
    gffRead                                 html  
    gffReadGR                               html  
    iexpr                                   html  
    indexes-replace                         html  
    indexes                                 html  
    last                                    html  
    mergedDate                              html  
    pData-replace                           html  
    pData                                   html  
    pctOverlap                              html  
    plotLatentTranscripts                   html  
    plotMeans                               html  
    plotTranscripts                         html  
    sampleNames                             html  
    seqnames                                html  
    stattest                                html  
    structure                               html  
    subset                                  html  
    tGene                                   html  
    texpr                                   html  
    transcriptIDs                           html  
    transcriptNames                         html  
    writeFiles                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ballgown' as ballgown_2.27.1.zip
* DONE (ballgown)
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
package 'ballgown' successfully unpacked and MD5 sums checked