Back to Multiple platform build/check report for BioC 3.15
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-19 11:07:08 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for annotate on riesling1


To the developers/maintainers of the annotate package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/annotate.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 56/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
annotate 1.73.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-01-18 13:55:18 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/annotate
git_branch: master
git_last_commit: bd601f0
git_last_commit_date: 2021-10-26 11:45:29 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'AnnotationDbi' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: annotate
Version: 1.73.0
Command: rm -rf annotate.buildbin-libdir && mkdir annotate.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=annotate.buildbin-libdir annotate_1.73.0.tar.gz
StartedAt: 2022-01-18 20:38:09 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 20:39:23 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 73.2 seconds
RetCode: 0
Status:   OK  
PackageFile: annotate_1.73.0.zip
PackageFileSize: 2.064 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf annotate.buildbin-libdir && mkdir annotate.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=annotate.buildbin-libdir annotate_1.73.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'annotate' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'annotate'
    finding HTML links ... done
    ACCNUMStats                             html  
    GO2heatmap                              html  
    GOmnplot                                html  
    HTMLPage-class                          html  
    LL2homology                             html  
    PMIDAmat                                html  
    PWAmat                                  html  
    UniGeneQuery                            html  
    accessionToUID                          html  
    annPkgName                              html  
    annotate-defunct                        html  
    aqListGOIDs                             html  
    blastSequences                          html  
    buildChromLocation                      html  
    buildPubMedAbst                         html  
    chrCats                                 html  
    chromLocation-class                     html  
    compatibleVersions                      html  
    dropECode                               html  
    entrezGeneByID                          html  
    entrezGeneQuery                         html  
    filterGOByOntology                      html  
    findNeighbors                           html  
    genbank                                 html  
    getAnnMap                               html  
    getEvidence                             html  
    getGOTerm                               html  
    getOntology                             html  
    getPMInfo                               html  
    getSYMBOL                               html  
    getSeq4Acc                              html  
    getTDRows                               html  
    hasGOannote                             html  
    hgByChroms                              html  
    hgCLengths                              html  
    hgu95AProbLocs                          html  
    hgu95Achroloc                           html  
    hgu95Achrom                             html  
    hgu95All                                html  
    hgu95Asym                               html  
    homoData-class                          html  
    htmlpage                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/annotate.buildbin-libdir/00LOCK-annotate/00new/annotate/help/htmlpage.html
    isValidkey                              html  
    makeAnchor                              html  
    mapOrgs                                 html  
    organism                                html  
    p2LL                                    html  
    pm.abstGrep                             html  
    pm.getabst                              html  
    pm.titles                               html  
    pmAbst2HTML                             html  
    pmid2MIAME                              html  
    pmidQuery                               html  
    pubMedAbst-class                        html  
    pubmed                                  html  
    readGEOAnn                              html  
    serializeEnv                            html  
    setRepository                           html  
    updateSymbolsToValidKeys                html  
    usedChromGenes                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'annotate' as annotate_1.73.0.zip
* DONE (annotate)