Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-22 11:06:51 -0500 (Sat, 22 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for annaffy on riesling1


To the developers/maintainers of the annaffy package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/annaffy.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 54/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
annaffy 1.67.0  (landing page)
Colin A. Smith
Snapshot Date: 2022-01-21 13:55:18 -0500 (Fri, 21 Jan 2022)
git_url: https://git.bioconductor.org/packages/annaffy
git_branch: master
git_last_commit: 98222ad
git_last_commit_date: 2021-10-26 11:46:08 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    NA    NA  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'Biobase' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: annaffy
Version: 1.67.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL annaffy
StartedAt: 2022-01-21 15:46:20 -0500 (Fri, 21 Jan 2022)
EndedAt: 2022-01-21 15:47:43 -0500 (Fri, 21 Jan 2022)
EllapsedTime: 82.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL annaffy
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'annaffy' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'annaffy'
    finding HTML links ... done
    aaf.character                           html  
    aaf.goterm                              html  
    aaf.handler                             html  
    aaf.integer                             html  
    aaf.raw                                 html  
    aafChromLoc-class                       html  
    aafChromLoc                             html  
    aafChromosome-class                     html  
    aafChromosome                           html  
    aafCytoband-class                       html  
    aafCytoband                             html  
    aafDescription-class                    html  
    aafDescription                          html  
    aafExpr                                 html  
    aafGO-class                             html  
    aafGO                                   html  
    aafGOItem-class                         html  
    aafGenBank-class                        html  
    aafGenBank                              html  
    aafIntensity-class                      html  
    aafList-class                           html  
    aafLocusLink-class                      html  
    aafLocusLink                            html  
    aafPathway-class                        html  
    aafPathway                              html  
    aafPathwayItem-class                    html  
    aafProbe-class                          html  
    aafProbe                                html  
    aafPubMed-class                         html  
    aafPubMed                               html  
    aafSearchGO                             html  
    aafSearchText                           html  
    aafSigned-class                         html  
    aafSymbol-class                         html  
    aafSymbol                               html  
    aafTable-class                          html  
    aafTable                                html  
    aafTableAnn                             html  
    aafTableFrame                           html  
    aafTableInt                             html  
    chkPkgs                                 html  
    getCSS-methods                          html  
    getHTML-methods                         html  
    getTD-methods                           html  
    getText-methods                         html  
    getURL-methods                          html  
    finding level-2 HTML links ... done

Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/annaffy/man/getURL-methods.Rd:25: missing link 'aafUniGene-class'
    is.annpkg                               html  
    selectorWidget                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (annaffy)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'msmsEDA' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'puma' is missing or broken
 done