Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-03-04 11:38:48 -0500 (Mon, 04 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4676 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" | 4414 |
merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4441 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" | 4417 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2/2251 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
a4Base 1.51.0 (landing page) Laure Cougnaud
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the a4Base package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/a4Base.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: a4Base |
Version: 1.51.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:a4Base.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings a4Base_1.51.0.tar.gz |
StartedAt: 2024-03-01 23:50:52 -0500 (Fri, 01 Mar 2024) |
EndedAt: 2024-03-01 23:58:04 -0500 (Fri, 01 Mar 2024) |
EllapsedTime: 431.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: a4Base.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:a4Base.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings a4Base_1.51.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/a4Base.Rcheck’ * using R Under development (unstable) (2024-01-16 r85808) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘a4Base/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘a4Base’ version ‘1.51.0’ * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘JavaGD’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘a4Base’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) filterVarInt.Rd:52: Escaped LaTeX specials: \& checkRd: (-1) histPvalue.Rd:50: Escaped LaTeX specials: \& checkRd: (-1) lassoReg.Rd:38: Escaped LaTeX specials: \& checkRd: (-1) spectralMap.Rd:49: Escaped LaTeX specials: \& checkRd: (-1) volcanoPlot.Rd:45: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed spectralMap 14.245 0.710 18.916 computeLogRatio 10.128 0.380 11.266 plotLogRatio 9.406 0.276 11.058 plotCombMultSamples 3.692 0.299 5.292 plotComb2Samples 3.454 0.150 5.168 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/a4Base.Rcheck/00check.log’ for details.
a4Base.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL a4Base ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘a4Base’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (a4Base)
a4Base.Rcheck/a4Base-Ex.timings
name | user | system | elapsed | |
a4palette | 0.088 | 0.005 | 0.101 | |
addQuantilesColors | 2.832 | 0.489 | 3.622 | |
boxPlot | 4.103 | 0.129 | 4.603 | |
combineTwoExpressionSet | 0.000 | 0.001 | 0.001 | |
computeLogRatio | 10.128 | 0.380 | 11.266 | |
createExpressionSet | 0.072 | 0.001 | 0.086 | |
filterVarInt | 3.806 | 0.145 | 4.573 | |
heatmap.expressionSet | 0.002 | 0.008 | 0.010 | |
histPvalue | 2.713 | 0.083 | 2.974 | |
histpvalueplotter | 2.766 | 0.097 | 3.724 | |
lassoReg | 2.773 | 0.099 | 4.035 | |
logReg | 0.001 | 0.001 | 0.003 | |
nlcvTT | 0.000 | 0.001 | 0.001 | |
plot1gene | 2.646 | 0.105 | 3.220 | |
plotComb2Samples | 3.454 | 0.150 | 5.168 | |
plotCombMultSamples | 3.692 | 0.299 | 5.292 | |
plotCombination2genes | 3.783 | 0.131 | 4.043 | |
plotLogRatio | 9.406 | 0.276 | 11.058 | |
probabilitiesPlot | 0.001 | 0.001 | 0.001 | |
probe2gene | 2.450 | 0.076 | 3.022 | |
profilesPlot | 2.701 | 0.085 | 3.368 | |
propdegenescalculation | 2.795 | 0.083 | 3.668 | |
replicates | 0.002 | 0.001 | 0.005 | |
spectralMap | 14.245 | 0.710 | 18.916 | |
tTest | 3.183 | 0.205 | 4.481 | |
volcanoPlot | 3.413 | 0.201 | 4.980 | |