Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-03-28 11:37:16 -0400 (Thu, 28 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4708 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" | 4446 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4471 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" | 4426 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2258/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
XINA 1.21.0 (landing page) Lang Ho Lee
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | TIMEOUT | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the XINA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XINA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: XINA |
Version: 1.21.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:XINA.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings XINA_1.21.0.tar.gz |
StartedAt: 2024-03-28 03:48:49 -0400 (Thu, 28 Mar 2024) |
EndedAt: 2024-03-28 03:50:58 -0400 (Thu, 28 Mar 2024) |
EllapsedTime: 130.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: XINA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:XINA.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings XINA_1.21.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/XINA.Rcheck’ * using R Under development (unstable) (2024-03-18 r86148) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘XINA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘XINA’ version ‘1.21.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘XINA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed xina_clustering 20.160 0.080 20.241 plot_condition_compositions 12.329 0.064 12.395 mutate_colors 7.231 0.072 7.304 plot_clusters 6.938 0.040 6.979 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
XINA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL XINA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘XINA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XINA)
XINA.Rcheck/XINA-Ex.timings
name | user | system | elapsed | |
alluvial_enriched | 2.156 | 0.044 | 2.200 | |
draw_alluvial_plot | 0.054 | 0.000 | 0.054 | |
get_comigrations_by_name | 0.033 | 0.000 | 0.033 | |
get_condition_biased_comigrations | 4.579 | 0.056 | 4.636 | |
get_unknown_ppi_nodes | 0.06 | 0.00 | 0.06 | |
load_previous_results | 0.822 | 0.040 | 0.862 | |
make_random_xina_data | 0.288 | 0.024 | 0.312 | |
mutate_colors | 7.231 | 0.072 | 7.304 | |
plot_clusters | 6.938 | 0.040 | 6.979 | |
plot_clusters_all | 1.34 | 0.02 | 1.36 | |
plot_condition_compositions | 12.329 | 0.064 | 12.395 | |
plot_enrichment_results | 0.001 | 0.000 | 0.001 | |
xina_analysis | 0.001 | 0.000 | 0.000 | |
xina_clustering | 20.160 | 0.080 | 20.241 | |
xina_enrichment | 0.001 | 0.000 | 0.000 | |
xina_plot_all | 3.732 | 0.104 | 3.820 | |
xina_plot_bycluster | 0.161 | 0.023 | 0.185 | |
xina_plot_single | 0.126 | 0.004 | 0.130 | |