Robert Castelo
| Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022) |
| git_url: https://git.bioconductor.org/packages/VariantFiltering |
| git_branch: master |
| git_last_commit: d9fa4db |
| git_last_commit_date: 2022-04-26 11:19:20 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-06-24 11:06:00 -0400 (Fri, 24 Jun 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4331 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4136 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4147 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the VariantFiltering package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VariantFiltering.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2074/2118 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| VariantFiltering 1.33.0 (landing page) Robert Castelo
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: VariantFiltering |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL VariantFiltering |
| StartedAt: 2022-06-23 15:44:04 -0400 (Thu, 23 Jun 2022) |
| EndedAt: 2022-06-23 15:45:03 -0400 (Thu, 23 Jun 2022) |
| EllapsedTime: 59.5 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL VariantFiltering ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’ * installing *source* package ‘VariantFiltering’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c R_init_VariantFiltering.c -o R_init_VariantFiltering.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c methods-WeightMatrix.c -o methods-WeightMatrix.o gcc -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o VariantFiltering.so Biostrings_stubs.o R_init_VariantFiltering.o methods-WeightMatrix.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.16-bioc/R/library/00LOCK-VariantFiltering/00new/VariantFiltering/libs ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'GenomeInfoDb' for request: 'releaseName' when loading 'VariantFiltering' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'GenomeInfoDb' for request: 'releaseName' when loading 'VariantFiltering' ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location No methods found in package 'GenomeInfoDb' for request: 'releaseName' when loading 'VariantFiltering' ** testing if installed package keeps a record of temporary installation path * DONE (VariantFiltering)