############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data VariantExperiment ### ############################################################################## ############################################################################## * checking for file ‘VariantExperiment/DESCRIPTION’ ... OK * preparing ‘VariantExperiment’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘VariantExperiment-class.Rmd’ using rmarkdown Quitting from lines 115-120 [GDSArray] (VariantExperiment-class.Rmd) Error: processing vignette 'VariantExperiment-class.Rmd' failed with diagnostics: The GDS file is closed or uninitialized. --- failed re-building ‘VariantExperiment-class.Rmd’ SUMMARY: processing the following file failed: ‘VariantExperiment-class.Rmd’ Error: Vignette re-building failed. Execution halted