Back to Multiple platform build/check report for BioC 3.16
ABCDEFGHIJKLMNOPQRSTU[V]WXYZ

This page was generated on 2022-06-24 11:08:48 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for VanillaICE on lconway


To the developers/maintainers of the VanillaICE package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VanillaICE.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2069/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.59.0  (landing page)
Robert Scharpf
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/VanillaICE
git_branch: master
git_last_commit: 8430988
git_last_commit_date: 2022-04-26 11:00:21 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: VanillaICE
Version: 1.59.0
Command: rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.59.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R VanillaICE.buildbin-libdir
StartedAt: 2022-06-24 00:01:54 -0400 (Fri, 24 Jun 2022)
EndedAt: 2022-06-24 00:02:41 -0400 (Fri, 24 Jun 2022)
EllapsedTime: 46.9 seconds
RetCode: 0
Status:   OK  
PackageFile: VanillaICE_1.59.0.tgz
PackageFileSize: 3.039 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.59.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R VanillaICE.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=VanillaICE.buildbin-libdir VanillaICE_1.59.0.tar.gz'
>>>>>>> 

* installing *source* package ‘VanillaICE’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rinit.c -o rinit.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c viterbi.c -o viterbi.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VanillaICE.so rinit.o viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
Creating a new generic function for ‘distance’ in package ‘VanillaICE’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
** testing if installed package keeps a record of temporary installation path
* DONE (VanillaICE)


>>>>>>> 
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs/VanillaICE.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/VanillaICE.so"