Back to Multiple platform build/check report for BioC 3.16
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2022-06-03 11:05:59 -0400 (Fri, 03 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 RC (2022-04-21 r82226) -- "Vigorous Calisthenics" 4364
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-04-24 r82246 ucrt) -- "Vigorous Calisthenics" 4168
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-04-24 r82246) -- "Vigorous Calisthenics" 4184
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for TraRe on nebbiolo2


To the developers/maintainers of the TraRe package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TraRe.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2020/2116HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TraRe 1.5.0  (landing page)
Jesus De La Fuente Cedeño
Snapshot Date: 2022-06-02 14:00:04 -0400 (Thu, 02 Jun 2022)
git_url: https://git.bioconductor.org/packages/TraRe
git_branch: master
git_last_commit: 6e8284d
git_last_commit_date: 2022-04-26 12:12:54 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: TraRe
Version: 1.5.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:TraRe.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --no-vignettes --timings TraRe_1.5.0.tar.gz
StartedAt: 2022-06-02 21:51:12 -0400 (Thu, 02 Jun 2022)
EndedAt: 2022-06-02 21:52:42 -0400 (Thu, 02 Jun 2022)
EllapsedTime: 90.2 seconds
RetCode: 0
Status:   OK  
CheckDir: TraRe.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:TraRe.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --no-vignettes --timings TraRe_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/TraRe.Rcheck’
* using R version 4.2.0 RC (2022-04-21 r82226)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TraRe/DESCRIPTION’ ... OK
* this is package ‘TraRe’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TraRe’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
LINKER_run       41.696  3.517  26.665
LINKER_runPhase1 34.553  3.367  19.301
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

TraRe.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL TraRe
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’
* installing *source* package ‘TraRe’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TraRe)

Tests output

TraRe.Rcheck/tests/runTests.Rout


R version 4.2.0 RC (2022-04-21 r82226) -- "Vigorous Calisthenics"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("TraRe")


RUNIT TEST PROTOCOL -- Thu Jun  2 21:52:39 2022 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
TraRe RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  0.343   0.038   0.370 

Example timings

TraRe.Rcheck/TraRe-Ex.timings

nameusersystemelapsed
LINKER_run41.696 3.51726.665
LINKER_runPhase134.553 3.36719.301
LINKER_runPhase24.5490.0474.596
NET_run3.8360.0123.849
create_html_summary2.9820.0723.054
generatecliques2.2140.0362.251
html_from_graph1.4180.0361.454
plot_igraph0.8870.0040.892
preparerewiring0.0250.0040.030
rewiring_test0.3780.0040.382
runrewiring0.6750.0000.676