Back to Multiple platform build/check report for BioC 3.15
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2021-11-30 13:55:16 -0500 (Tue, 30 Nov 2021).

INSTALL results for ToxicoGx on riesling1

To the developers/maintainers of the ToxicoGx package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ToxicoGx.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1960/2068HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ToxicoGx 1.5.0  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2021-11-29 14:50:17 -0500 (Mon, 29 Nov 2021)
git_url: https://git.bioconductor.org/packages/ToxicoGx
git_branch: master
git_last_commit: 1422492
git_last_commit_date: 2021-10-26 13:00:37 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'CoreGx' which is not available

Summary

Package: ToxicoGx
Version: 1.5.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/ToxicoGx_1.5.0.tar.gz && rm -rf ToxicoGx.buildbin-libdir && mkdir ToxicoGx.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ToxicoGx.buildbin-libdir ToxicoGx_1.5.0.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ToxicoGx_1.5.0.zip && rm ToxicoGx_1.5.0.tar.gz ToxicoGx_1.5.0.zip
StartedAt: 2021-11-29 18:44:53 -0500 (Mon, 29 Nov 2021)
EndedAt: 2021-11-29 18:47:50 -0500 (Mon, 29 Nov 2021)
EllapsedTime: 177.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/ToxicoGx_1.5.0.tar.gz && rm -rf ToxicoGx.buildbin-libdir && mkdir ToxicoGx.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ToxicoGx.buildbin-libdir ToxicoGx_1.5.0.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ToxicoGx_1.5.0.zip && rm ToxicoGx_1.5.0.tar.gz ToxicoGx_1.5.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 4147k  100 4147k    0     0  4772k      0 --:--:-- --:--:-- --:--:-- 4772k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'ToxicoGx' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ToxicoGx'
    finding HTML links ... done
    HCC_sig                                 html  
    TGGATESsmall                            html  
    ToxicoSet-class                         html  
    ToxicoSet                               html  
    ToxicoSig                               html  
    annotation-set                          html  
    annotation                              html  
    availableTSets                          html  
    checkTSetStructure                      html  
    computeAUC                              html  
    computeICn                              html  
    computeLimmaDiffExpr-ToxicoSet-method   html  
    computeLimmaDiffExpr                    html  
    curation-set                            html  
    curation                                html  
    datasetType-set                         html  
    datasetType                             html  
    dim-ToxicoSet-method                    html  
    downloadTSet                            html  
    drugGeneResponseCurve                   html  
    drugInfo-set                            html  
    drugInfo                                html  
    drugNames-set                           html  
    drugNames                               html  
    drugPerturbationSig                     html  
    drugTimeResponseCurve                   html  
    geneDrugPerturbation                    html  
    logLogisticRegression                   html  
    mDataNames-ToxicoSet-method             html  
    name-ToxicoSet-method                   html  
    sensitivityRaw-set                      html  
    sensitivityRaw                          html  
    sensitivitySlot-set                     html  
    sensitivitySlot                         html  
    show-ToxicoSet-method                   html  
    show-ToxicoSig-method                   html  
    showSigAnnot                            html  
    sub-ToxicoSet-ANY-ANY-ANY-method        html  
    subsetTo                                html  
    summarizeMolecularProfiles              html  
    summarizeSensitivityProfiles            html  
    updateCellId                            html  
    updateDrugId                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ToxicoGx' as ToxicoGx_1.5.0.zip
* DONE (ToxicoGx)
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
package 'ToxicoGx' successfully unpacked and MD5 sums checked