| Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-08-18 11:07:23 -0400 (Thu, 18 Aug 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4379 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4161 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.1 Patched (2022-07-09 r82577) -- "Funny-Looking Kid" | 4169 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the TCGAbiolinksGUI package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAbiolinksGUI.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1989/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Tiago C. Silva
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: TCGAbiolinksGUI |
| Version: 1.23.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/TCGAbiolinksGUI_1.23.1.tar.gz && rm -rf TCGAbiolinksGUI.buildbin-libdir && mkdir TCGAbiolinksGUI.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI_1.23.1.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinksGUI_1.23.1.zip && rm TCGAbiolinksGUI_1.23.1.tar.gz TCGAbiolinksGUI_1.23.1.zip |
| StartedAt: 2022-08-17 16:54:21 -0400 (Wed, 17 Aug 2022) |
| EndedAt: 2022-08-17 16:54:26 -0400 (Wed, 17 Aug 2022) |
| EllapsedTime: 4.6 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/TCGAbiolinksGUI_1.23.1.tar.gz && rm -rf TCGAbiolinksGUI.buildbin-libdir && mkdir TCGAbiolinksGUI.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI_1.23.1.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinksGUI_1.23.1.zip && rm TCGAbiolinksGUI_1.23.1.tar.gz TCGAbiolinksGUI_1.23.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
33 7160k 33 2376k 0 0 7515k 0 --:--:-- --:--:-- --:--:-- 7521k
100 7160k 100 7160k 0 0 7633k 0 --:--:-- --:--:-- --:--:-- 7633k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'TCGAbiolinksGUI' ...
** using staged installation
** R
Error in parse(outFile) :
F:/biocbuild/bbs-3.16-bioc/tmpdir/RtmpYrJjoC/R.INSTALL44b47073714e/TCGAbiolinksGUI/R/zzz.R:28:1: unexpected '}'
27: }
28: }
^
ERROR: unable to collate and parse R files for package 'TCGAbiolinksGUI'
* removing 'F:/biocbuild/bbs-3.16-bioc/meat/TCGAbiolinksGUI.buildbin-libdir/TCGAbiolinksGUI'