Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-26 11:08:54 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4164
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4059
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4001
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4118
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TCC on riesling1


To the developers/maintainers of the TCC package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCC.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1928/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCC 1.35.0  (landing page)
Jianqiang Sun
Snapshot Date: 2022-01-25 13:55:17 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/TCC
git_branch: master
git_last_commit: ff9cdf7
git_last_commit_date: 2021-10-26 12:09:39 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: TCC
Version: 1.35.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TCC
StartedAt: 2022-01-25 16:00:22 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 16:01:19 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 56.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TCC
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'TCC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'calcNormFactors' in package 'TCC'
** help
*** installing help indices
  converting help for package 'TCC'
    finding HTML links ... done
    ROKU                                    html  
    TCC-class                               html  
    TCC                                     html  
    WAD                                     html  
    arab                                    html  
    calcAUCValue                            html  
    calcNormFactors                         html  
    clusterSample                           html  
    estimateDE                              html  
    filterLowCountGenes                     html  
    getNormalizedData                       html  
    getResult                               html  
    hypoData                                html  
    hypoData_mg                             html  
    hypoData_ts                             html  
    makeFCMatrix                            html  
    nakai                                   html  
    plot.TCC                                html  
    plotFCPseudocolor                       html  
    simulateReadCounts                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TCC)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'imageHTS' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'tweeDEseq' is missing or broken
 done