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This page was generated on 2022-01-17 11:08:32 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TAPseq on riesling1


To the developers/maintainers of the TAPseq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TAPseq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1920/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TAPseq 1.7.0  (landing page)
Andreas R. Gschwind
Snapshot Date: 2022-01-16 13:55:18 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/TAPseq
git_branch: master
git_last_commit: a6002ee
git_last_commit_date: 2021-10-26 12:57:48 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicAlignments' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: TAPseq
Version: 1.7.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TAPseq
StartedAt: 2022-01-16 16:08:46 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 16:09:45 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 58.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TAPseq
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'TAPseq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TAPseq'
    finding HTML links ... done
    TAPseq                                  html  
    TAPseqInput                             html  
    TsIO-class                              html  
    TsIOList-class                          html  
    accessors                               html  
    bone_marrow_genex                       html  
    checkPrimers                            html  
    check_tool_installation                 html  
    chr11_genes                             html  
    chr11_polyA_sites                       html  
    chr11_primers                           html  
    chr11_truncated_txs                     html  
    chr11_truncated_txs_seq                 html  
    createIORecord                          html  
    designPrimers                           html  
    estimateOffTargets                      html  
    exportPrimers                           html  
    getTxsSeq                               html  
    get_gt_sequences                        html  
    inferPolyASites                         html  
    parsePrimer3Output                      html  
    pickPrimers                             html  
    selectTargetGenes                       html  
    truncateTxsPolyA                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Following software required by TAPseq is not installed or not in PATH:

	primer3_core
	makeblastdb
	blastn

Please install these tools before trying to use this package!
** testing if installed package can be loaded from final location
Warning: Following software required by TAPseq is not installed or not in PATH:

	primer3_core
	makeblastdb
	blastn

Please install these tools before trying to use this package!
** testing if installed package keeps a record of temporary installation path
* DONE (TAPseq)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SCOPE' is missing or broken
 done