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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark
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* checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK
* preparing ‘SummarizedBenchmark’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown
2024-06-02 22:50:13.222 R[53530:244180508] XType: com.apple.fonts is not accessible.
2024-06-02 22:50:13.222 R[53530:244180508] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘CaseStudy-RNAseqQuantification.Rmd’

--- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown

Quitting from lines 47-54 [load-fluidigm-data] (CaseStudy-SingleCellSimulation.Rmd)
Error: processing vignette 'CaseStudy-SingleCellSimulation.Rmd' failed with diagnostics:
failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/fluidigm/other_data/list_contents.json.gz'
--- failed re-building ‘CaseStudy-SingleCellSimulation.Rmd’

--- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown
--- finished re-building ‘Feature-ErrorHandling.Rmd’

--- re-building ‘Feature-Iterative.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Iterative.Rmd’

--- re-building ‘Feature-Parallel.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Parallel.Rmd’

--- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’

--- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’

--- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘CaseStudy-SingleCellSimulation.Rmd’

Error: Vignette re-building failed.
Execution halted