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This page was generated on 2022-01-17 11:08:31 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for StructuralVariantAnnotation on riesling1


To the developers/maintainers of the StructuralVariantAnnotation package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/StructuralVariantAnnotation.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1889/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
StructuralVariantAnnotation 1.11.0  (landing page)
Daniel Cameron
Snapshot Date: 2022-01-16 13:55:18 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/StructuralVariantAnnotation
git_branch: master
git_last_commit: f787e1f
git_last_commit_date: 2021-12-22 02:00:43 -0500 (Wed, 22 Dec 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: StructuralVariantAnnotation
Version: 1.11.0
Command: rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.11.0.tar.gz
StartedAt: 2022-01-16 21:27:30 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 21:28:46 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 76.1 seconds
RetCode: 0
Status:   OK  
PackageFile: StructuralVariantAnnotation_1.11.0.zip
PackageFileSize: 841.7 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.11.0.tar.gz
###
##############################################################################
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* installing *source* package 'StructuralVariantAnnotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'StructuralVariantAnnotation'
    finding HTML links ... done
    StructuralVariantAnnotation             html  
    align_breakpoints                       html  
    breakendRanges                          html  
    breakpointGRangesToVCF                  html  
    breakpointRanges                        html  
    breakpointgr2bedpe                      html  
    calculateReferenceHomology              html  
    countBreakpointOverlaps                 html  
    elementExtract                          html  
    extractBreakpointSequence               html  
    extractReferenceSequence                html  
    findBreakpointOverlaps                  html  
    findInsDupOverlaps                      html  
    findTransitiveCalls                     html  
    hasPartner                              html  
    isStructural                            html  
    isSymbolic                              html  
    numtDetect                              html  
    pairs2breakpointgr                      html  
    partner                                 html  
    rtDetect                                html  
    simpleEventLength                       html  
    simpleEventType                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'StructuralVariantAnnotation' as StructuralVariantAnnotation_1.11.0.zip
* DONE (StructuralVariantAnnotation)