Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-04-01 11:06:20 -0400 (Sat, 01 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" | 4551 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" | 4312 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" | 4309 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SpidermiR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpidermiR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1960/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SpidermiR 1.29.0 (landing page) Claudia Cava
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | NA | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: SpidermiR |
Version: 1.29.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SpidermiR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SpidermiR_1.29.0.tar.gz |
StartedAt: 2023-04-01 06:52:26 -0400 (Sat, 01 Apr 2023) |
EndedAt: 2023-04-01 06:57:34 -0400 (Sat, 01 Apr 2023) |
EllapsedTime: 308.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SpidermiR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SpidermiR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SpidermiR_1.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/SpidermiR.Rcheck’ * using R Under development (unstable) (2023-03-16 r83985) * using platform: x86_64-apple-darwin17.0 (64-bit) * R was compiled by Apple clang version 12.0.0 (clang-1200.0.32.29) GNU Fortran (GCC) 8.2.0 * running under: macOS Mojave 10.14.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SpidermiR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SpidermiR’ version ‘1.29.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SpidermiR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘gdata’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SpidermiRdownload_miRNAprediction 15.806 2.630 27.406 SpidermiRquery_disease 1.463 0.037 8.894 * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.17-bioc/meat/SpidermiR.Rcheck/00check.log’ for details.
SpidermiR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SpidermiR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3/Resources/library’ * installing *source* package ‘SpidermiR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpidermiR)
SpidermiR.Rcheck/SpidermiR-Ex.timings
name | user | system | elapsed | |
SpidermiRanalyze_degree_centrality | 0.005 | 0.000 | 0.005 | |
SpidermiRanalyze_direct_net | 0.006 | 0.001 | 0.006 | |
SpidermiRanalyze_direct_subnetwork | 0.010 | 0.001 | 0.013 | |
SpidermiRanalyze_subnetwork_neigh | 0.005 | 0.001 | 0.006 | |
SpidermiRdownload_drug_gene | 2.398 | 0.092 | 4.083 | |
SpidermiRdownload_miRNAprediction | 15.806 | 2.630 | 27.406 | |
SpidermiRdownload_net | 0.348 | 0.018 | 1.298 | |
SpidermiRprepare_NET | 0.934 | 0.039 | 2.186 | |
SpidermiRquery_disease | 1.463 | 0.037 | 8.894 | |
SpidermiRquery_networks_type | 0.022 | 0.002 | 0.515 | |
SpidermiRquery_spec_networks | 0.079 | 0.000 | 0.316 | |
SpidermiRquery_species | 0.014 | 0.000 | 0.176 | |