Back to Multiple platform build/check report for BioC 3.15
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-01-17 11:08:28 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for SpatialDecon on riesling1


To the developers/maintainers of the SpatialDecon package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpatialDecon.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1839/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpatialDecon 1.5.4  (landing page)
Nicole Ortogero
Snapshot Date: 2022-01-16 13:55:18 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/SpatialDecon
git_branch: master
git_last_commit: 5099a40
git_last_commit_date: 2022-01-07 16:50:55 -0500 (Fri, 07 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'Biobase' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SpatialDecon
Version: 1.5.4
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SpatialDecon
StartedAt: 2022-01-16 16:13:52 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 16:15:18 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 86.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SpatialDecon
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'SpatialDecon' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SpatialDecon'
    finding HTML links ... done
    SpatialDecon-package                    html  
    TIL_barplot                             html  
    cellcols                                html  
    collapseCellTypes                       html  
    create_profile_matrix                   html  
    derive_GeoMx_background                 html  
    download_profile_matrix                 html  
    florets                                 html  
    mean.resid.sd                           html  
    mergeTumorIntoX                         html  
    mini_geomx_dataset                      html  
    mini_singleCell_dataset                 html  
    nsclc                                   html  
    reverseDecon                            html  
    runCollapseCellTypes-NanoStringGeoMxSet-method
                                            html  
    runCollapseCellTypes                    html  
    runErrorModel                           html  
    runMergeTumorIntoX-NanoStringGeoMxSet-method
                                            html  
    runMergeTumorIntoX                      html  
    runReverseDecon-NanoStringGeoMxSet-method
                                            html  
    runReverseDecon                         html  
    runspatialdecon-NanoStringGeoMxSet-method
                                            html  
    runspatialdecon-Seurat-method           html  
    runspatialdecon                         html  
    safeTME                                 html  
    safeTME.matches                         html  
    spatialdecon                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpatialDecon)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'musicatk' is missing or broken
 done