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This page was generated on 2022-01-20 11:08:25 -0500 (Thu, 20 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4162
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4057
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3999
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4116
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for SpatialDecon on riesling1


To the developers/maintainers of the SpatialDecon package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpatialDecon.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1839/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpatialDecon 1.5.4  (landing page)
Nicole Ortogero
Snapshot Date: 2022-01-19 13:55:26 -0500 (Wed, 19 Jan 2022)
git_url: https://git.bioconductor.org/packages/SpatialDecon
git_branch: master
git_last_commit: 5099a40
git_last_commit_date: 2022-01-07 16:50:55 -0500 (Fri, 07 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'Biobase' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SpatialDecon
Version: 1.5.4
Command: rm -rf SpatialDecon.buildbin-libdir && mkdir SpatialDecon.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SpatialDecon.buildbin-libdir SpatialDecon_1.5.4.tar.gz
StartedAt: 2022-01-19 21:22:42 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 21:23:51 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 68.7 seconds
RetCode: 0
Status:   OK  
PackageFile: SpatialDecon_1.5.4.zip
PackageFileSize: 3.552 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SpatialDecon.buildbin-libdir && mkdir SpatialDecon.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SpatialDecon.buildbin-libdir SpatialDecon_1.5.4.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'SpatialDecon' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SpatialDecon'
    finding HTML links ... done
    SpatialDecon-package                    html  
    TIL_barplot                             html  
    cellcols                                html  
    collapseCellTypes                       html  
    create_profile_matrix                   html  
    derive_GeoMx_background                 html  
    download_profile_matrix                 html  
    florets                                 html  
    mean.resid.sd                           html  
    mergeTumorIntoX                         html  
    mini_geomx_dataset                      html  
    mini_singleCell_dataset                 html  
    nsclc                                   html  
    reverseDecon                            html  
    runCollapseCellTypes-NanoStringGeoMxSet-method
                                            html  
    runCollapseCellTypes                    html  
    runErrorModel                           html  
    runMergeTumorIntoX-NanoStringGeoMxSet-method
                                            html  
    runMergeTumorIntoX                      html  
    runReverseDecon-NanoStringGeoMxSet-method
                                            html  
    runReverseDecon                         html  
    runspatialdecon-NanoStringGeoMxSet-method
                                            html  
    runspatialdecon-Seurat-method           html  
    runspatialdecon                         html  
    safeTME                                 html  
    safeTME.matches                         html  
    spatialdecon                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SpatialDecon' as SpatialDecon_1.5.4.zip
* DONE (SpatialDecon)