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This page was generated on 2022-01-24 11:08:28 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for SomaticSignatures on riesling1


To the developers/maintainers of the SomaticSignatures package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SomaticSignatures.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1829/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticSignatures 2.31.1  (landing page)
Julian Gehring
Snapshot Date: 2022-01-23 13:55:15 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/SomaticSignatures
git_branch: master
git_last_commit: 562e355
git_last_commit_date: 2021-11-21 00:56:12 -0500 (Sun, 21 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'VariantAnnotation' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SomaticSignatures
Version: 2.31.1
Command: rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.31.1.tar.gz
StartedAt: 2022-01-23 21:22:35 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 21:23:45 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 70.1 seconds
RetCode: 0
Status:   OK  
PackageFile: SomaticSignatures_2.31.1.zip
PackageFileSize: 1.514 MiB

Command output

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###
### Running command:
###
###   rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.31.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'SomaticSignatures' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SomaticSignatures'
    finding HTML links ... done
    MutationalSignatures-class              html  
    SomaticSignatures-package               html  
    cluster-spetrum                         html  
    decomposition-functions                 html  
    gc                                      html  
    granges-utils                           html  
    finding level-2 HTML links ... done

    hs-chrs                                 html  
    kmers-data                              html  
    kmers                                   html  
    motif-functions                         html  
    mutation-context                        html  
    mutation-distribution                   html  
    mutational-normalization                html  
    mutational-plots                        html  
    mutational-signatures                   html  
    mutect                                  html  
    number-signatures                       html  
    sca-data                                html  
    signature-plot-functions                html  
    signatures21-data                       html  
    utils                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SomaticSignatures' as SomaticSignatures_2.31.1.zip
* DONE (SomaticSignatures)