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This page was generated on 2021-10-18 12:04:21 -0400 (Mon, 18 Oct 2021).

CHECK results for SingleCellSignalR on riesling1

To the developers/maintainers of the SingleCellSignalR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleCellSignalR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1786/2060HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SingleCellSignalR 1.5.0  (landing page)
Jacques Colinge
Snapshot Date: 2021-10-17 14:50:03 -0400 (Sun, 17 Oct 2021)
git_url: https://git.bioconductor.org/packages/SingleCellSignalR
git_branch: master
git_last_commit: 2ed3832
git_last_commit_date: 2021-05-19 12:52:18 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    NA  

Summary

Package: SingleCellSignalR
Version: 1.5.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SingleCellSignalR.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings SingleCellSignalR_1.5.0.tar.gz
StartedAt: 2021-10-18 03:10:19 -0400 (Mon, 18 Oct 2021)
EndedAt: 2021-10-18 03:14:36 -0400 (Mon, 18 Oct 2021)
EllapsedTime: 257.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: SingleCellSignalR.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SingleCellSignalR.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings SingleCellSignalR_1.5.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/SingleCellSignalR.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SingleCellSignalR/DESCRIPTION' ... OK
* this is package 'SingleCellSignalR' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SingleCellSignalR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 5.9 MB without LazyDataCompression set
  See ยง1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.14-bioc/meat/SingleCellSignalR.Rcheck/00check.log'
for details.



Installation output

SingleCellSignalR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SingleCellSignalR_1.5.0.tar.gz && rm -rf SingleCellSignalR.buildbin-libdir && mkdir SingleCellSignalR.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SingleCellSignalR.buildbin-libdir SingleCellSignalR_1.5.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SingleCellSignalR_1.5.0.zip && rm SingleCellSignalR_1.5.0.tar.gz SingleCellSignalR_1.5.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 97 3774k   97 3682k    0     0  7987k      0 --:--:-- --:--:-- --:--:-- 7970k
100 3774k  100 3774k    0     0  5541k      0 --:--:-- --:--:-- --:--:-- 5533k

install for i386

* installing *source* package 'SingleCellSignalR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SingleCellSignalR'
    finding HTML links ... done
    LRdb                                    html  
    LRscore                                 html  
    PwC_ReactomeKEGG                        html  
    cell_classifier                         html  
    cell_signaling                          html  
    cluster_analysis                        html  
    clustering                              html  
    data_prepare                            html  
    example_dataset                         html  
    expression_plot                         html  
    expression_plot_2                       html  
    inter_network                           html  
    intra_network                           html  
    markers                                 html  
    markers_default                         html  
    mm2Hs                                   html  
    mv_interactions                         html  
    simplify_interactions                   html  
    visualize_interactions                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SingleCellSignalR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SingleCellSignalR' as SingleCellSignalR_1.5.0.zip
* DONE (SingleCellSignalR)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'SingleCellSignalR' successfully unpacked and MD5 sums checked

Tests output


Example timings

SingleCellSignalR.Rcheck/examples_i386/SingleCellSignalR-Ex.timings

nameusersystemelapsed
LRscore000
cell_classifier0.090.000.09
cell_signaling0.030.000.03
cluster_analysis000
clustering0.490.030.52
data_prepare0.030.000.03
expression_plot0.000.010.01
expression_plot_2000
inter_network000
intra_network3.010.143.16
markers000
mv_interactions0.020.000.02
simplify_interactions000
visualize_interactions0.190.050.23

SingleCellSignalR.Rcheck/examples_x64/SingleCellSignalR-Ex.timings

nameusersystemelapsed
LRscore000
cell_classifier0.110.000.11
cell_signaling0.020.010.03
cluster_analysis000
clustering0.450.040.49
data_prepare0.030.000.03
expression_plot000
expression_plot_2000
inter_network000
intra_network3.470.203.67
markers000
mv_interactions000
simplify_interactions000
visualize_interactions0.140.020.16