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This page was generated on 2022-01-18 11:06:25 -0500 (Tue, 18 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ScISI on nebbiolo1


To the developers/maintainers of the ScISI package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ScISI.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1721/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ScISI 1.67.1  (landing page)
Tony Chiang
Snapshot Date: 2022-01-17 13:55:17 -0500 (Mon, 17 Jan 2022)
git_url: https://git.bioconductor.org/packages/ScISI
git_branch: master
git_last_commit: 5c1326c
git_last_commit_date: 2022-01-05 14:57:14 -0500 (Wed, 05 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ScISI
Version: 1.67.1
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ScISI
StartedAt: 2022-01-17 17:34:07 -0500 (Mon, 17 Jan 2022)
EndedAt: 2022-01-17 17:35:05 -0500 (Mon, 17 Jan 2022)
EllapsedTime: 58.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ScISI
###
##############################################################################
##############################################################################


* checking for file ‘ScISI/DESCRIPTION’ ... OK
* preparing ‘ScISI’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘vignette.Rnw’ using Sweave
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname


Loading required package: RpsiXML
Loading required package: XML
Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16

Attaching package: ‘RpsiXML’

The following object is masked from ‘package:IRanges’:

    members

Loading required package: annotate
Loading required package: apComplex
Loading required package: graph

Attaching package: ‘graph’

The following object is masked from ‘package:XML’:

    addNode

Loading required package: RBGL

Warning: Package 'ScISI' is deprecated and will be removed from Bioconductor
  version 3.16
Warning in toGrep[[j]]$x <- gtcc : Coercing LHS to a list
Warning in toGrep[[j]]$x <- desc : Coercing LHS to a list
Warning: Package 'ppiData' is deprecated and will be removed from Bioconductor
  version 3.16

Error: processing vignette 'vignette.Rnw' failed with diagnostics:
 chunk 12 (label = ppiData) 
Error in get("Gavin2006BPGraph") : object 'Gavin2006BPGraph' not found

--- failed re-building ‘vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘vignette.Rnw’

Error: Vignette re-building failed.
Execution halted