############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb ### ############################################################################## ############################################################################## * checking for file ‘STRINGdb/DESCRIPTION’ ... OK * preparing ‘STRINGdb’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘STRINGdb.Rnw’ using Sweave trying URL 'https://stringdb-downloads.org/download/protein.aliases.v12.0/9606.protein.aliases.v12.0.txt.gz' Content type 'application/octet-stream' length 19777800 bytes (18.9 MB) ================================================== downloaded 18.9 MB trying URL 'https://stringdb-downloads.org/download/protein.info.v12.0/9606.protein.info.v12.0.txt.gz' Content type 'application/octet-stream' length 1970090 bytes (1.9 MB) ================================================== downloaded 1.9 MB trying URL 'https://stringdb-downloads.org/download/protein.links.v12.0/9606.protein.links.v12.0.txt.gz' Content type 'application/octet-stream' length 83164437 bytes (79.3 MB) ================================================== downloaded 79.3 MB Error: processing vignette 'STRINGdb.Rnw' failed with diagnostics: Running 'texi2dvi' on 'STRINGdb.tex' failed. LaTeX errors: ! Missing $ inserted. $ l.43 ...on (https://string-db.org/cgi/input?input_ page_active_form=organisms... ! Emergency stop. $ l.43 ...on (https://string-db.org/cgi/input?input_ page_active_form=organisms... ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘STRINGdb.Rnw’ SUMMARY: processing the following file failed: ‘STRINGdb.Rnw’ Error: Vignette re-building failed. Execution halted