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This page was generated on 2024-03-27 11:37:21 -0400 (Wed, 27 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4698
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4436
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4461
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4376
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1984/2264HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPRelate 1.37.3  (landing page)
Xiuwen Zheng
Snapshot Date: 2024-03-26 14:00:18 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/SNPRelate
git_branch: devel
git_last_commit: dd437f1
git_last_commit_date: 2024-03-09 04:07:20 -0400 (Sat, 09 Mar 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

INSTALL results for SNPRelate on nebbiolo1


To the developers/maintainers of the SNPRelate package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SNPRelate
Version: 1.37.3
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL SNPRelate
StartedAt: 2024-03-26 15:06:46 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 15:07:18 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 32.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL SNPRelate
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘SNPRelate’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c ConvToGDS.cpp -o ConvToGDS.o
gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c R_SNPRelate.c -o R_SNPRelate.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c SNPRelate.cpp -o SNPRelate.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c ThreadPool.cpp -o ThreadPool.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c dGenGWAS.cpp -o dGenGWAS.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c dVect.cpp -o dVect.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genBeta.cpp -o genBeta.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genEIGMIX.cpp -o genEIGMIX.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genFst.cpp -o genFst.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genHWE.cpp -o genHWE.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genIBD.cpp -o genIBD.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genIBS.cpp -o genIBS.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genKING.cpp -o genKING.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genLD.cpp -o genLD.o
genLD.cpp:749:15: warning: ‘LD::CThreadPoolLD’ declared with greater visibility than the type of its field ‘LD::CThreadPoolLD::thpool’ [-Wattributes]
  749 |         class CThreadPoolLD
      |               ^~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genPCA.cpp -o genPCA.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genSlideWin.cpp -o genSlideWin.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -llapack -L/home/biocbuild/bbs-3.19-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-SNPRelate/00new/SNPRelate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SNPRelate)