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This page was generated on 2022-01-28 11:06:57 -0500 (Fri, 28 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4167
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4062
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4004
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4121
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for SNPRelate on nebbiolo1


To the developers/maintainers of the SNPRelate package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1827/2077HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPRelate 1.29.0  (landing page)
Xiuwen Zheng
Snapshot Date: 2022-01-27 13:55:17 -0500 (Thu, 27 Jan 2022)
git_url: https://git.bioconductor.org/packages/SNPRelate
git_branch: master
git_last_commit: ae44832
git_last_commit_date: 2021-10-26 12:15:42 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SNPRelate
Version: 1.29.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL SNPRelate
StartedAt: 2022-01-27 15:08:48 -0500 (Thu, 27 Jan 2022)
EndedAt: 2022-01-27 15:09:11 -0500 (Thu, 27 Jan 2022)
EllapsedTime: 22.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL SNPRelate
###
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* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘SNPRelate’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ConvToGDS.cpp -o ConvToGDS.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c R_SNPRelate.c -o R_SNPRelate.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c SNPRelate.cpp -o SNPRelate.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ThreadPool.cpp -o ThreadPool.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c dGenGWAS.cpp -o dGenGWAS.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c dVect.cpp -o dVect.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genBeta.cpp -o genBeta.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genEIGMIX.cpp -o genEIGMIX.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genFst.cpp -o genFst.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genHWE.cpp -o genHWE.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genIBD.cpp -o genIBD.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genIBS.cpp -o genIBS.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genKING.cpp -o genKING.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genLD.cpp -o genLD.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genPCA.cpp -o genPCA.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c genSlideWin.cpp -o genSlideWin.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -L/home/biocbuild/bbs-3.15-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.15-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.15-bioc/R/library/00LOCK-SNPRelate/00new/SNPRelate/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SNPRelate)