Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-02-18 02:29:14 -0500 (Sun, 18 Feb 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4657 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" | 4397 |
merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4424 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" | 4400 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1915/2244 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SGCP 1.3.0 (landing page) Niloofar AghaieAbiane
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the SGCP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SGCP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SGCP |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SGCP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SGCP_1.3.0.tar.gz |
StartedAt: 2024-02-17 10:35:54 -0500 (Sat, 17 Feb 2024) |
EndedAt: 2024-02-17 10:48:45 -0500 (Sat, 17 Feb 2024) |
EllapsedTime: 770.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SGCP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SGCP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SGCP_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/SGCP.Rcheck’ * using R Under development (unstable) (2024-01-16 r85808) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SGCP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SGCP’ version ‘1.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SGCP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SGCP_semiSupervised 4.728 0.087 5.804 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SGCP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SGCP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SGCP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SGCP)
SGCP.Rcheck/SGCP-Ex.timings
name | user | system | elapsed | |
SGCP_adjacencyMatrix | 0.207 | 0.044 | 0.309 | |
SGCP_clustering | 0.391 | 0.026 | 0.509 | |
SGCP_ezPLOT | 0.619 | 0.035 | 0.802 | |
SGCP_ezSGCP | 0.384 | 0.029 | 0.508 | |
SGCP_go | 0.269 | 0.017 | 0.347 | |
SGCP_plot_bar | 1.650 | 0.033 | 1.963 | |
SGCP_plot_conductance | 0.624 | 0.007 | 0.760 | |
SGCP_plot_density | 0.576 | 0.015 | 0.732 | |
SGCP_plot_heatMap | 0.912 | 0.074 | 1.193 | |
SGCP_plot_jitter | 0.491 | 0.012 | 0.613 | |
SGCP_plot_pca | 0.272 | 0.004 | 0.327 | |
SGCP_plot_pie | 1.173 | 0.017 | 1.442 | |
SGCP_plot_silhouette | 1.352 | 0.023 | 1.663 | |
SGCP_semiLabeling | 0.158 | 0.009 | 0.202 | |
SGCP_semiSupervised | 4.728 | 0.087 | 5.804 | |
cheng | 0.349 | 0.024 | 0.450 | |
resClus | 1.393 | 0.377 | 2.077 | |
resFinalGO | 0.075 | 0.014 | 0.108 | |
resInitialGO | 0.075 | 0.013 | 0.104 | |
resSemiLabel | 0.009 | 0.003 | 0.015 | |
resSemiSupervised | 0.063 | 0.004 | 0.078 | |
sgcp | 0.191 | 0.007 | 0.242 | |