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This page was generated on 2022-06-24 11:07:05 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for Rgraphviz on palomino4


To the developers/maintainers of the Rgraphviz package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rgraphviz.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1619/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rgraphviz 2.41.1  (landing page)
Kasper Daniel Hansen
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/Rgraphviz
git_branch: master
git_last_commit: 7d88d06
git_last_commit_date: 2022-05-12 19:06:06 -0400 (Thu, 12 May 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: Rgraphviz
Version: 2.41.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/Rgraphviz_2.41.1.tar.gz && rm -rf Rgraphviz.buildbin-libdir && mkdir Rgraphviz.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rgraphviz.buildbin-libdir Rgraphviz_2.41.1.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL Rgraphviz_2.41.1.zip && rm Rgraphviz_2.41.1.tar.gz Rgraphviz_2.41.1.zip
StartedAt: 2022-06-23 15:37:43 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 15:58:38 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 1255.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/Rgraphviz_2.41.1.tar.gz && rm -rf Rgraphviz.buildbin-libdir && mkdir Rgraphviz.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rgraphviz.buildbin-libdir Rgraphviz_2.41.1.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL Rgraphviz_2.41.1.zip && rm Rgraphviz_2.41.1.tar.gz Rgraphviz_2.41.1.zip
###
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##############################################################################


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only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'Rgraphviz' ...
** using staged installation
configure.win: loading site script /usr/local/etc/config.site
configure.win: Using bundled Graphviz.
configure.win: Searching for the compilers specified by R.
checking for gcc... gcc
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checking how to run the C preprocessor... gcc -E
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
configure.win: Preparing to compile Graphviz.
configure.win: Configuring bundled Graphviz.
checking build system type... x86_64-w64-mingw32
checking host system type... x86_64-w64-mingw32
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
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configure: creating ./config.status
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating lib/cdt/Makefile
config.status: creating lib/cdt/libcdt.pc
config.status: creating lib/graph/Makefile
config.status: creating lib/graph/libgraph.pc
config.status: creating lib/rbtree/Makefile
config.status: creating lib/pathplan/Makefile
config.status: creating lib/pathplan/libpathplan.pc
config.status: creating lib/dotgen/Makefile
config.status: creating lib/neatogen/Makefile
config.status: creating lib/fdpgen/Makefile
config.status: creating lib/sparse/Makefile
config.status: creating lib/sfdpgen/Makefile
config.status: creating lib/osage/Makefile
config.status: creating lib/circogen/Makefile
config.status: creating lib/twopigen/Makefile
config.status: creating lib/patchwork/Makefile
config.status: creating lib/pack/Makefile
config.status: creating lib/ortho/Makefile
config.status: creating lib/common/Makefile
config.status: creating lib/vpsc/Makefile
config.status: creating lib/gvc/Makefile
config.status: creating lib/gvc/libgvc.pc
config.status: creating lib/xdot/Makefile
config.status: creating lib/xdot/libxdot.pc
config.status: creating plugin/Makefile
config.status: creating plugin/core/Makefile
config.status: creating plugin/dot_layout/Makefile
config.status: creating plugin/neato_layout/Makefile
config.status: creating graphviz.spec
config.status: creating Doxyfile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in libltdl (/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt'  '--host=x86_64-w64-mingw32' '--build=x86_64-w64-mingw32' 'CC=gcc' 'CXX=g++ -std=gnu++11' 'CFLAGS=-fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign' 'CXXFLAGS=-O2 -Wall -mfpmath=sse -msse2 -mstackrealign' 'LDFLAGS=' '--libdir=/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib' '--includedir=/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include' '--with-cgraph=no' '--enable-swig=no' '--enable-static' '--disable-shared' '--with-pic' '--with-libgd=no' '--disable-ltdl' '--without-x' '--without-expat' '--without-devil' '--without-rsvg' '--without-ghostscript' '--without-visio' '--without-pangocairo' '--without-lasi' '--without-glitz' '--without-freetype2' '--without-fontconfig' '--without-rpat' '--without-glut' '--without-gts' '--without-png' '--without-tcl' '--without-jpeg' 'build_alias=x86_64-w64-mingw32' 'host_alias=x86_64-w64-mingw32' 'R_LIBS=F:/biocbuild/bbs-3.16-bioc/meat/Rgraphviz.buildbin-libdir/00LOCK-Rgraphviz/00new;F:/biocbuild/bbs-3.16-bioc/meat/Rgraphviz.buildbin-libdir' --cache-file=/dev/null --srcdir=.
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checking host system type... x86_64-w64-mingw32
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checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
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checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... Win32 ld.exe
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
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checking whether deplibs are loaded by dlopen... unknown
checking for argz.h... no
checking for error_t... no
checking for argz_add... no
checking for argz_append... no
checking for argz_count... no
checking for argz_create_sep... no
checking for argz_insert... no
checking for argz_next... no
checking for argz_stringify... no
checking whether libtool supports -dlopen/-dlpreopen... yes
checking for unistd.h... (cached) yes
checking for dl.h... no
checking for sys/dl.h... no
checking for dld.h... no
checking for mach-o/dyld.h... no
checking for dirent.h... yes
checking for closedir... yes
checking for opendir... yes
checking for readdir... yes
checking for strlcat... no
checking for strlcpy... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands

----------------------------------------------------------------

graphviz-2.28.0 will be compiled with the following:

options:
  cgraph:        No (disabled by default - experimental)
  digcola:       Yes
  expat:         No (disabled)
  fontconfig:    No (disabled)
  freetype:      No (disabled)
  glut:          No (disabled)
  gts:           No (disabled)
  ipsepcola:     No (disabled by default - C++ portability issues)
  ltdl:          No (disabled)
  ortho:         Yes
  png:           No (disabled)
  jpeg:          No (disabled)
  sfdp:          Yes
  shared:        No (disabled)
  static:        Yes
  qt:            No (qmake not found)

commands:
  dot:           Yes (always enabled)
  neato:         Yes (always enabled)
  fdp:           Yes (always enabled)
  circo:         Yes (always enabled)
  twopi:         Yes (always enabled)
  gvpr:          Yes (always enabled)
  gvmap:         Yes (always enabled)
  lefty:         No (missing Xaw headers)
  smyrna:        No (disabled by default - experimental)
  gvedit:        No (qmake not found)

plugin libraries:
  dot_layout:    Yes (always enabled)
  neato_layout:  Yes (always enabled)
  core:          Yes (always enabled)
  devil:         No (disabled)
  gd:            No (disabled)
  gdiplus:       No (disabled by default - Windows only)
  gdk_pixbuf:    No (gdk_pixbuf library not available)
  ghostscript:   No (disabled)
  glitz:         No (disabled by default - incomplete)
  gtk:           No (gtk library not available)
  lasi:          No (disabled)
  ming:          No (disabled by default - incomplete)
  pangocairo:    No (disabled)
  quartz:        No (disabled by default - Mac only)
  rsvg:          No (disabled)
  visio:         No (disabled by default - experimental)
  xlib:          No (disabled or unavailable)

language extensions:
  gv_sharp:      No (swig not available)
  gv_go:         No (disabled by default - experimental)
  gv_guile:      No (swig not available)
  gv_io:         No (disabled by default - no swig support yet)
  gv_java:       No (swig not available)
  gv_lua:        No (swig not available)
  gv_ocaml:      No (swig not available)
  gv_perl:       No (swig not available)
  gv_php:        No (swig not available)
  gv_python:     No (swig not available)
  gv_python23:   No (disabled by default - for multiversion installs)
  gv_python24:   No (disabled by default - for multiversion installs)
  gv_python25:   No (disabled by default - for multiversion installs)
  gv_python26:   No (disabled by default - for multiversion installs)
  gv_python27:   No (disabled by default - for multiversion installs)
  gv_R:          No (swig not available)
  gv_ruby:       No (swig not available)
  gv_tcl:        No (tcl not available)

  tcldot:        No (tcl not available)
  tclpathplan:   No (tcl not available)
  gdtclft:       No (tcl not available)
  tkspline:      No (tk not available)
grep 'PACKAGE\|VERSION\|GVPLUGIN' config.h > graphviz_version.h
make  install-recursive
make[1]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz'
Making install in libltdl
make[2]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl'
/bin/sh /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl/config/install-sh -d . 
cp ./argz_.h argz.h-t
mv argz.h-t argz.h
make  install-am
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c -o dlopen.o
mv -f .deps/dlopen.Tpo .deps/dlopen.Plo
/bin/sh ./libtool --tag=CC   --mode=link gcc  -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -module -avoid-version  -o dlopen.la  dlopen.lo -ldl -ldl 
libtool: link: ar cru .libs/dlopen.a  dlopen.o
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/dlopen.a
libtool: link: ( cd ".libs" && rm -f "dlopen.la" && cp -pR "../dlopen.la" "dlopen.la" )
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT loadlibrary.lo -MD -MP -MF .deps/loadlibrary.Tpo -c -o loadlibrary.lo `test -f 'loaders/loadlibrary.c' || echo './'`loaders/loadlibrary.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT loadlibrary.lo -MD -MP -MF .deps/loadlibrary.Tpo -c loaders/loadlibrary.c -o loadlibrary.o
In file included from libltdl/lt__private.h:57,
                 from loaders/loadlibrary.c:32:
loaders/loadlibrary.c: In function 'vm_open':
./ltdl.h:44:24: warning: the address of 'wpath' will always evaluate as 'true' [-Waddress]
   44 | #define LT_STRLEN(s) (((s) && (s)[0]) ? strlen (s) : 0)
      |                        ^
loaders/loadlibrary.c:159:12: note: in expansion of macro 'LT_STRLEN'
  159 |      len = LT_STRLEN (wpath);
      |            ^~~~~~~~~
mv -f .deps/loadlibrary.Tpo .deps/loadlibrary.Plo
/bin/sh ./libtool --tag=CC   --mode=link gcc  -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -module -avoid-version  -o loadlibrary.la  loadlibrary.lo  -ldl 
libtool: link: ar cru .libs/loadlibrary.a  loadlibrary.o
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/loadlibrary.a
libtool: link: ( cd ".libs" && rm -f "loadlibrary.la" && cp -pR "../loadlibrary.la" "loadlibrary.la" )
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c -o libltdlc_la-preopen.lo `test -f 'loaders/preopen.c' || echo './'`loaders/preopen.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c loaders/preopen.c -o libltdlc_la-preopen.o
mv -f .deps/libltdlc_la-preopen.Tpo .deps/libltdlc_la-preopen.Plo
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c -o libltdlc_la-lt__alloc.lo `test -f 'lt__alloc.c' || echo './'`lt__alloc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c lt__alloc.c -o libltdlc_la-lt__alloc.o
mv -f .deps/libltdlc_la-lt__alloc.Tpo .deps/libltdlc_la-lt__alloc.Plo
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c -o libltdlc_la-lt_dlloader.lo `test -f 'lt_dlloader.c' || echo './'`lt_dlloader.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c lt_dlloader.c -o libltdlc_la-lt_dlloader.o
mv -f .deps/libltdlc_la-lt_dlloader.Tpo .deps/libltdlc_la-lt_dlloader.Plo
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c -o libltdlc_la-lt_error.lo `test -f 'lt_error.c' || echo './'`lt_error.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c lt_error.c -o libltdlc_la-lt_error.o
mv -f .deps/libltdlc_la-lt_error.Tpo .deps/libltdlc_la-lt_error.Plo
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-ltdl.lo -MD -MP -MF .deps/libltdlc_la-ltdl.Tpo -c -o libltdlc_la-ltdl.lo `test -f 'ltdl.c' || echo './'`ltdl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-ltdl.lo -MD -MP -MF .deps/libltdlc_la-ltdl.Tpo -c ltdl.c -o libltdlc_la-ltdl.o
In file included from libltdl/lt__private.h:51,
                 from ltdl.c:32:
ltdl.c: In function 'try_dlopen':
./ltdl.h:44:24: warning: the address of 'libext' will always evaluate as 'true' [-Waddress]
   44 | #define LT_STRLEN(s) (((s) && (s)[0]) ? strlen (s) : 0)
      |                        ^
libltdl/lt__alloc.h:38:42: note: in definition of macro 'MALLOC'
   38 | #define MALLOC(tp, n)  (tp*) lt__malloc((n) * sizeof(tp))
      |                                          ^
ltdl.c:1268:52: note: in expansion of macro 'LT_STRLEN'
 1268 |    archive_name = MALLOC (char, LT_STRLEN (name) + LT_STRLEN (libext) + 2);
      |                                                    ^~~~~~~~~
mv -f .deps/libltdlc_la-ltdl.Tpo .deps/libltdlc_la-ltdl.Plo
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-slist.lo -MD -MP -MF .deps/libltdlc_la-slist.Tpo -c -o libltdlc_la-slist.lo `test -f 'slist.c' || echo './'`slist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT libltdlc_la-slist.lo -MD -MP -MF .deps/libltdlc_la-slist.Tpo -c slist.c -o libltdlc_la-slist.o
mv -f .deps/libltdlc_la-slist.Tpo .deps/libltdlc_la-slist.Plo
/bin/sh ./libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT argz.lo -MD -MP -MF .deps/argz.Tpo -c -o argz.lo argz.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT argz.lo -MD -MP -MF .deps/argz.Tpo -c argz.c -o argz.o
mv -f .deps/argz.Tpo .deps/argz.Plo
/bin/sh ./libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT lt__strl.lo -MD -MP -MF .deps/lt__strl.Tpo -c -o lt__strl.lo lt__strl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -MT lt__strl.lo -MD -MP -MF .deps/lt__strl.Tpo -c lt__strl.c -o lt__strl.o
mv -f .deps/lt__strl.Tpo .deps/lt__strl.Plo
/bin/sh ./libtool --tag=CC   --mode=link gcc  -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -no-undefined -dlpreopen dlopen.la -dlpreopen loadlibrary.la   -o libltdlc.la  libltdlc_la-preopen.lo libltdlc_la-lt__alloc.lo libltdlc_la-lt_dlloader.lo libltdlc_la-lt_error.lo libltdlc_la-ltdl.lo libltdlc_la-slist.lo argz.lo lt__strl.lo -ldl 
libtool: link: rm -f .libs/libltdlc.nm .libs/libltdlc.nmS .libs/libltdlc.nmT
libtool: link: (cd .libs && gcc -fcommon -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c -fno-builtin  -DDLL_EXPORT -DPIC "libltdlcS.c")
libtool: link: rm -f ".libs/libltdlcS.c" ".libs/libltdlc.nm" ".libs/libltdlc.nmS" ".libs/libltdlc.nmT"
libtool: link: (cd .libs/libltdlc.lax/dlopen.a && ar x "/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl/./.libs/dlopen.a")
libtool: link: (cd .libs/libltdlc.lax/loadlibrary.a && ar x "/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl/./.libs/loadlibrary.a")
libtool: link: ar cru .libs/libltdlc.a  libltdlc_la-preopen.o libltdlc_la-lt__alloc.o libltdlc_la-lt_dlloader.o libltdlc_la-lt_error.o libltdlc_la-ltdl.o libltdlc_la-slist.o argz.o lt__strl.o .libs/libltdlcS.o  .libs/libltdlc.lax/dlopen.a/dlopen.o  .libs/libltdlc.lax/loadlibrary.a/loadlibrary.o 
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libltdlc.a
libtool: link: rm -fr .libs/libltdlc.lax
libtool: link: ( cd ".libs" && rm -f "libltdlc.la" && cp -pR "../libltdlc.la" "libltdlc.la" )
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl'
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl'
make[2]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/libltdl'
Making install in lib
make[2]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib'
Making install in cdt
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/cdt'
  CC       dtclose.lo
  CC       dtdisc.lo
dtdisc.c:13:16: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   13 | static Void_t* dtmemory(dt, addr, size, disc)
      |                ^~~~~~~~
  CC       dtextract.lo
  CC       dtflatten.lo
  CC       dthash.lo
dthash.c:15:13: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   15 | static void dthtab(dt)
      |             ^~~~~~
dthash.c:81:16: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   81 | static Void_t* dthash(dt,obj,type)
      |                ^~~~~~
dthash.c: In function 'dthash':
dthash.c:306:6: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
  306 |     (*dt->memoryf)(dt,(Void_t*)r,0,disc);
      |     ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  CC       dtlist.lo
dtlist.c:11:16: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   11 | static Void_t* dtlist(dt, obj, type)
      |                ^~~~~~
  CC       dtmethod.lo
  CC       dtopen.lo
  CC       dtrenew.lo
  CC       dtrestore.lo
  CC       dtsize.lo
dtsize.c:11:12: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   11 | static int treecount(e)
      |            ^~~~~~~~~
  CC       dtstat.lo
dtstat.c:11:13: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   11 | static void dttstat(ds,root,depth,level)
      |             ^~~~~~~
dtstat.c:31:13: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   31 | static void dthstat(data, ds, count)
      |             ^~~~~~~
  CC       dtstrhash.lo
  CC       dttree.lo
dttree.c:14:16: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   14 | static Void_t* dttree(dt,obj,type)
      |                ^~~~~~
dttree.c: In function 'dttree':
dttree.c:218:16: warning: 'me' may be used uninitialized in this function [-Wmaybe-uninitialized]
  218 |    root->right = link.left;
  CC       dttreeset.lo
dttreeset.c:11:18: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   11 | static Dtlink_t* treebalance(list, size)
      |                  ^~~~~~~~~~~
  CC       dtview.lo
dtview.c:12:16: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   12 | static Void_t* dtvsearch(dt,obj,type)
      |                ^~~~~~~~~
dtview.c: In function 'dtvsearch':
dtview.c:20:12: warning: variable 'lk' set but not used [-Wunused-but-set-variable]
   20 |  int  cmp, lk, sz, ky;
      |            ^~
  CC       dtwalk.lo
dtwalk.c: In function 'dtwalk':
dtwalk.c:14:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   14 | int(*  userf)();
      | ^~~
  CCLD     libcdt.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
  CCLD     libcdt_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/cdt'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libcdt.la '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
libtool: install: /usr/bin/install -c .libs/libcdt.lai /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libcdt.la
libtool: install: /usr/bin/install -c .libs/libcdt.a /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libcdt.a
libtool: install: chmod 644 /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libcdt.a
libtool: install: ranlib /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libcdt.a
----------------------------------------------------------------------
Libraries have been installed in:
   /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-LLIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/install -c -m 644 cdt.3 '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/install -c -m 644 cdt.3.pdf '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/install -c -m 644 libcdt.pc '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/install -c -m 644 cdt.h '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/cdt'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/cdt'
Making install in graph
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/graph'
  CC       attribs.lo
attribs.c: In function 'agcopydict':
attribs.c:286:18: warning: zero-length gnu_printf format string [-Wformat-zero-length]
  286 |  fprintf(stderr, "", a->name, a->value);
      |                  ^~
  CC       agxbuf.lo
  CC       edge.lo
  CC       graph.lo
graph.c: In function 'agclose':
graph.c:374:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  374 |     if (g->attr)
      |     ^~
graph.c:376:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  376 |  if (g->didset)
      |  ^~
  CC       graphio.lo
  CC       lexer.lo
lexer.c: In function 'scan_token':
lexer.c:141:11: warning: comparison between pointer and zero character constant [-Wpointer-compare]
  141 |     if (p == '\0')
      |           ^~
lexer.c:141:9: note: did you mean to dereference the pointer?
  141 |     if (p == '\0')
      |         ^
lexer.c:147:12: warning: pointer targets in returning 'unsigned char *' from a function with return type 'char *' differ in signedness [-Wpointer-sign]
  147 |     return p;
      |            ^
lexer.c: In function 'html_pair':
lexer.c:322:9: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
  322 |     int rc, depth = 1;
      |         ^~
In file included from lexer.c:20:
lexer.c: In function 'aglex':
agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
lexer.c:413:29: note: in expansion of macro 'agxbuse'
  413 |  aglval.str = agstrdup_html(agxbuse(&xb));
      |                             ^~~~~~~
lexer.c:435:26: warning: pointer targets in passing argument 1 of 'scan_token' differ in signedness [-Wpointer-sign]
  435 |      LexPtr = scan_token(LexPtr, tbuf);
      |                          ^~~~~~
      |                          |
      |                          char *
lexer.c:136:40: note: expected 'unsigned char *' but argument is of type 'char *'
  136 | static char *scan_token(unsigned char *p, unsigned char *token)
      |                         ~~~~~~~~~~~~~~~^
lexer.c:435:34: warning: pointer targets in passing argument 2 of 'scan_token' differ in signedness [-Wpointer-sign]
  435 |      LexPtr = scan_token(LexPtr, tbuf);
      |                                  ^~~~
      |                                  |
      |                                  char *
lexer.c:136:58: note: expected 'unsigned char *' but argument is of type 'char *'
  136 | static char *scan_token(unsigned char *p, unsigned char *token)
      |                                           ~~~~~~~~~~~~~~~^~~~~
  CC       node.lo
  CC       parser.lo
  CC       refstr.lo
  CC       trie.lo
  CCLD     libgraph.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
  CCLD     libgraph_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/graph'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libgraph.la '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
libtool: install: /usr/bin/install -c .libs/libgraph.lai /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgraph.la
libtool: install: /usr/bin/install -c .libs/libgraph.a /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgraph.a
libtool: install: chmod 644 /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgraph.a
libtool: install: ranlib /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgraph.a
----------------------------------------------------------------------
Libraries have been installed in:
   /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-LLIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/install -c -m 644 graph.3 '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/install -c -m 644 graph.3.pdf '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/install -c -m 644 libgraph.pc '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/install -c -m 644 graph.h '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/graph'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/graph'
Making install in pathplan
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/pathplan'
  CC       cvt.lo
cvt.c:276:13: warning: 'append_bezier' defined but not used [-Wunused-function]
  276 | static void append_bezier(Ppoint_t * bezier)
      |             ^~~~~~~~~~~~~
  CC       inpoly.lo
  CC       route.lo
  CC       shortest.lo
  CC       shortestpth.lo
  CC       solvers.lo
  CC       triang.lo
  CC       util.lo
  CC       visibility.lo
  CCLD     libpathplan.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
  CCLD     libpathplan_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/pathplan'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libpathplan.la '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
libtool: install: /usr/bin/install -c .libs/libpathplan.lai /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libpathplan.la
libtool: install: /usr/bin/install -c .libs/libpathplan.a /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libpathplan.a
libtool: install: chmod 644 /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libpathplan.a
libtool: install: ranlib /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libpathplan.a
----------------------------------------------------------------------
Libraries have been installed in:
   /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-LLIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/install -c -m 644 pathplan.3 '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/install -c -m 644 pathplan.3.pdf '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/install -c -m 644 libpathplan.pc '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/install -c -m 644 pathgeom.h pathplan.h '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/pathplan'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/pathplan'
Making install in vpsc
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/vpsc'
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/vpsc'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/vpsc'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/vpsc'
Making install in rbtree
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/rbtree'
  CC       misc.lo
  CC       red_black_tree.lo
  CC       stack.lo
  CCLD     librbtree_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/rbtree'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/rbtree'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/rbtree'
Making install in ortho
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/ortho'
  CC       fPQ.lo
  CC       intset.lo
  CC       maze.lo
maze.c: In function 'mkMazeGraph':
maze.c:325:20: warning: variable 'ncnt' set but not used [-Wunused-but-set-variable]
  325 |     int nsides, i, ncnt, maxdeg;
      |                    ^~~~
  CC       ortho.lo
ortho.c: In function 'addLoop':
ortho.c:461:9: warning: variable 'wt' set but not used [-Wunused-but-set-variable]
  461 |  double wt;
      |         ^~
ortho.c: In function 'addNodeEdges':
ortho.c:497:9: warning: variable 'wt' set but not used [-Wunused-but-set-variable]
  497 |  double wt;
      |         ^~
ortho.c: In function 'decide_point':
ortho.c:878:11: warning: 'prec' may be used uninitialized in this function [-Wmaybe-uninitialized]
  878 |     return(ret);
      |           ^
ortho.c: In function 'putSeg':
ortho.c:545:5: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
  545 |     fprintf (fp, "((%f,%f),(%f,%f)) %s %s", seg->p.p1,seg->comm_coord,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  546 |       seg->p.p2, seg->comm_coord, bendToStr (seg->l1), bendToStr (seg->l2));
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ortho.c:545:5: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
ortho.c:542:5: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
  542 |     fprintf (fp, "((%f,%f),(%f,%f)) %s %s", seg->comm_coord, seg->p.p1,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  543 |       seg->comm_coord, seg->p.p2, bendToStr (seg->l1), bendToStr (seg->l2));
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ortho.c:542:5: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
ortho.c: In function 'orthoEdges':
ortho.c:192:11: warning: 'prevbp.x' may be used uninitialized in this function [-Wmaybe-uninitialized]
  192 |   else if (prevbp.x > bp1.x) l1 = B_RIGHT;
      |           ^
ortho.c:152:22: note: 'prevbp.x' was declared here
  152 |     pointf bp1, bp2, prevbp;  /* bend points */
      |                      ^~~~~~
ortho.c:179:11: warning: 'prevbp.y' may be used uninitialized in this function [-Wmaybe-uninitialized]
  179 |   else if (prevbp.y > bp1.y) l1 = B_UP;
      |           ^
ortho.c:152:22: note: 'prevbp.y' was declared here
  152 |     pointf bp1, bp2, prevbp;  /* bend points */
      |                      ^~~~~~
ortho.c:1356:2: warning: 'ps' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1356 |  freePS (ps);
      |  ^~~~~~~~~~~
  CC       partition.lo
partition.c: In function 'traverse_polygon':
partition.c:328:7: warning: variable 'do_switch' set but not used [-Wunused-but-set-variable]
  328 |   int do_switch = FALSE;
      |       ^~~~~~~~~
partition.c:327:7: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
  327 |   int retval;
      |       ^~~~~~
partition.c: In function 'partition':
partition.c:731:9: warning: variable 'nt' set but not used [-Wunused-but-set-variable]
  731 |     int nt;
      |         ^~
partition.c: In function 'make_new_monotone_poly':
partition.c:274:5: warning: 'tq' may be used uninitialized in this function [-Wmaybe-uninitialized]
  274 |   q = vp1->vpos[iq];
      |   ~~^~~~~~~~~~~~~~~
partition.c:298:18: warning: 'tp' may be used uninitialized in this function [-Wmaybe-uninitialized]
  298 |   vp0->vnext[ip] = v1;
      |   ~~~~~~~~~~~~~~~^~~~
partition.c: In function 'monotonate_trapezoids':
partition.c:665:10: warning: 'size' may be used uninitialized in this function [-Wmaybe-uninitialized]
  665 |   return size;
      |          ^~~~
  CC       rawgraph.lo
  CC       sgraph.lo
  CC       trapezoid.lo
trapezoid.c:66:12: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   66 | static int newnode()
      |            ^~~~~~~
trapezoid.c: In function 'add_segment':
trapezoid.c:437:7: warning: variable 'tritop' set but not used [-Wunused-but-set-variable]
  437 |   int tritop = 0, tribot = 0, is_swapped;
      |       ^~~~~~
trapezoid.c: In function 'add_segment.isra':
trapezoid.c:996:3: warning: 'tlastr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  996 |   merge_trapezoids(segnum, tfirstr, tlastr, S_RIGHT, tr, qs);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
trapezoid.c:996:3: warning: 'tfirstr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  CCLD     libortho_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/ortho'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/ortho'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/ortho'
Making install in sparse
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/sparse'
  CC       SparseMatrix.lo
SparseMatrix.c: In function 'SparseMatrix_import_binary':
SparseMatrix.c:629:48: warning: variable 'iread' set but not used [-Wunused-but-set-variable]
  629 |   int m, n, nz, nzmax, type, format, property, iread;
      |                                                ^~~~~
  CC       general.lo
  CC       BinaryHeap.lo
  CC       IntStack.lo
  CCLD     libsparse_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/sparse'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/sparse'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/sparse'
Making install in patchwork
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/patchwork'
  CC       patchwork.lo
  CC       patchworkinit.lo
  CC       tree_map.lo
  CCLD     libpatchwork_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/patchwork'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/patchwork'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/patchwork'
Making install in common
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/common'
  CC       arrows.lo
arrows.c: In function 'arrowOrthoClip':
arrows.c:392:21: warning: 'hlen' may be used uninitialized in this function [-Wmaybe-uninitialized]
  392 |      else r.x = p.x - hlen;
      |                 ~~~~^~~~~~
  CC       colxlate.lo
  CC       fontmetrics.lo
  CC       args.lo
  CC       memory.lo
  CC       globals.lo
  CC       htmllex.lo
In file included from render.h:47,
                 from htmllex.c:15:
htmllex.c: In function 'error_context':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
htmllex.c:57:35: note: in expansion of macro 'agxbuse'
   57 |     agerr(AGPREV, "... %s ...\n", agxbuse(state.xb));
      |                                   ^~~~~~~
  CC       htmlparse.lo
In file included from render.h:47,
                 from ../../lib/common/htmlparse.y:16:
../../lib/common/htmlparse.y: In function 'appendFItemList':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
../../lib/common/htmlparse.y:193:25: note: in expansion of macro 'agxbuse'
  193 |     fi->ti.str = strdup(agxbuse(ag));
      |                         ^~~~~~~
../../lib/common/htmlparse.y: In function 'htmlparse':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
../../lib/common/htmlparse.y:500:24: note: in expansion of macro 'agxbuse'
  500 |           if (nonSpace(agxbuse(HTMLstate.str))) {
      |                        ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
../../lib/common/htmlparse.y:511:24: note: in expansion of macro 'agxbuse'
  511 |           if (nonSpace(agxbuse(HTMLstate.str))) {
      |                        ^~~~~~~
  CC       htmltable.lo
In file included from render.h:47,
                 from htmltable.c:35:
htmltable.c: In function 'initAnchor':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
htmltable.c:299:7: note: in expansion of macro 'agxbuse'
  299 |  id = agxbuse (&xb);
      |       ^~~~~~~
htmltable.c: In function 'nameOf':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
htmltable.c:1665:12: note: in expansion of macro 'agxbuse'
 1665 |     return agxbuse(xb);
      |            ^~~~~~~
htmltable.c: In function 'make_html_label':
htmltable.c:1828:12: warning: 'env.g' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1828 |     g = env.g->root;
      |         ~~~^~
  CC       input.lo
input.c: In function 'dotneato_basename':
input.c:136:5: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
  136 |     while (*s) s++; s--;
      |     ^~~~~
input.c:136:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
  136 |     while (*s) s++; s--;
      |                     ^
In file included from render.h:47,
                 from input.c:15:
input.c: In function 'global_def':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
input.c:200:24: note: in expansion of macro 'agxbuse'
  200 |     sym = dclfun(NULL, agxbuse (xb), rhs);
      |                        ^~~~~~~
  CC       pointset.lo
  CC       postproc.lo
postproc.c: In function 'gv_postprocess':
postproc.c:24:1: warning: ' translate } def
/arrowlengt...' directive writing 560 bytes into a region of size between 230 and 296 [-Wformat-overflow=]
   24 | "/pathbox {\n\
      | ^~~~~~~~~~~~~~
   25 |     /Y exch %.5g sub def\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~
   26 |     /X exch %.5g sub def\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~
   27 |     /y exch %.5g sub def\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~
   28 |     /x exch %.5g sub def\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~
   29 |     newpath x y moveto\n\
      |     ~~~~~~~~~~~~~~~~~~~~~
   30 |     X y lineto\n\
      |     ~~~~~~~~~~~~~
   31 |     X Y lineto\n\
      |     ~~~~~~~~~~~~~
   32 |     x Y lineto\n\
      |     ~~~~~~~~~~~~~
   33 |     closepath stroke\n \
      |     ~~~~~~~~~~~~~~~~~~~~
   34 | } def\n\
      | ~~~~~~~~
   35 | /dbgstart { gsave %.5g %.5g translate } def\n\
      | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   36 | /arrowlength 10 def\n\
      | ~~~~~~~~~~~~~~~~~~~~~~
   37 | /arrowwidth arrowlength 2 div def\n\
      | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   38 | /arrowhead {\n\
      | ~~~~~~~~~~~~~~~
   39 |     gsave\n\
      |     ~~~~~~~~
   40 |     rotate\n\
      |     ~~~~~~~~~
   41 |     currentpoint\n\
      |     ~~~~~~~~~~~~~~~
   42 |     newpath\n\
      |     ~~~~~~~~~~
   43 |     moveto\n\
      |     ~~~~~~~~~
   44 |     arrowlength arrowwidth 2 div rlineto\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   45 |     0 arrowwidth neg rlineto\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~
   46 |     closepath fill\n\
      |     ~~~~~~~~~~~~~~~~~
   47 |     grestore\n\
      |     ~~~~~~~~~~~
   48 | } bind def\n\
      | ~~~~~~~~~~~~~
   49 | /makearrow {\n\
      | ~~~~~~~~~~~~~~~
   50 |     currentpoint exch pop sub exch currentpoint pop sub atan\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   51 |     arrowhead\n\
      |     ~~~~~~~~~~~~
   52 | } bind def\n\
      | ~~~~~~~~~~~~~
   53 | /point {\
      | ~~~~~~~~~
   54 |     newpath\
      |     ~~~~~~~~
   55 |     2 0 360 arc fill\
      |     ~~~~~~~~~~~~~~~~~
   56 | } def\
      | ~~~~~~
   57 | /makevec {\n\
      | ~~~~~~~~~~~~~
   58 |     /Y exch def\n\
      |     ~~~~~~~~~~~~~~
   59 |     /X exch def\n\
      |     ~~~~~~~~~~~~~~
   60 |     /y exch def\n\
      |     ~~~~~~~~~~~~~~
   61 |     /x exch def\n\
      |     ~~~~~~~~~~~~~~
   62 |     newpath x y moveto\n\
      |     ~~~~~~~~~~~~~~~~~~~~~
   63 |     X Y lineto stroke\n\
      |     ~~~~~~~~~~~~~~~~~~~~
   64 |     X Y moveto\n\
      |     ~~~~~~~~~~~~~
   65 |     x y makearrow\n\
      |     ~~~~~~~~~~~~~~~~
   66 | } def\n"
      | ~~~~~~~~
postproc.c:24:1: note: in definition of macro 'M1'
   24 | "/pathbox {\n\
      | ^~~~~~~~~~~~~~
   25 |     /Y exch %.5g sub def\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~
   26 |     /X exch %.5g sub def\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~
   27 |     /y exch %.5g sub def\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~
   28 |     /x exch %.5g sub def\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~
   29 |     newpath x y moveto\n\
      |     ~~~~~~~~~~~~~~~~~~~~~
   30 |     X y lineto\n\
      |     ~~~~~~~~~~~~~
   31 |     X Y lineto\n\
      |     ~~~~~~~~~~~~~
   32 |     x Y lineto\n\
      |     ~~~~~~~~~~~~~
   33 |     closepath stroke\n \
      |     ~~~~~~~~~~~~~~~~~~~~
   34 | } def\n\
      | ~~~~~~~~
   35 | /dbgstart { gsave %.5g %.5g translate } def\n\
      | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   36 | /arrowlength 10 def\n\
      | ~~~~~~~~~~~~~~~~~~~~~~
   37 | /arrowwidth arrowlength 2 div def\n\
      | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   38 | /arrowhead {\n\
      | ~~~~~~~~~~~~~~~
   39 |     gsave\n\
      |     ~~~~~~~~
   40 |     rotate\n\
      |     ~~~~~~~~~
   41 |     currentpoint\n\
      |     ~~~~~~~~~~~~~~~
   42 |     newpath\n\
      |     ~~~~~~~~~~
   43 |     moveto\n\
      |     ~~~~~~~~~
   44 |     arrowlength arrowwidth 2 div rlineto\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   45 |     0 arrowwidth neg rlineto\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~
   46 |     closepath fill\n\
      |     ~~~~~~~~~~~~~~~~~
   47 |     grestore\n\
      |     ~~~~~~~~~~~
   48 | } bind def\n\
      | ~~~~~~~~~~~~~
   49 | /makearrow {\n\
      | ~~~~~~~~~~~~~~~
   50 |     currentpoint exch pop sub exch currentpoint pop sub atan\n\
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   51 |     arrowhead\n\
      |     ~~~~~~~~~~~~
   52 | } bind def\n\
      | ~~~~~~~~~~~~~
   53 | /point {\
      | ~~~~~~~~~
   54 |     newpath\
      |     ~~~~~~~~
   55 |     2 0 360 arc fill\
      |     ~~~~~~~~~~~~~~~~~
   56 | } def\
      | ~~~~~~
   57 | /makevec {\n\
      | ~~~~~~~~~~~~~
   58 |     /Y exch def\n\
      |     ~~~~~~~~~~~~~~
   59 |     /X exch def\n\
      |     ~~~~~~~~~~~~~~
   60 |     /y exch def\n\
      |     ~~~~~~~~~~~~~~
   61 |     /x exch def\n\
      |     ~~~~~~~~~~~~~~
   62 |     newpath x y moveto\n\
      |     ~~~~~~~~~~~~~~~~~~~~~
   63 |     X Y lineto stroke\n\
      |     ~~~~~~~~~~~~~~~~~~~~
   64 |     X Y moveto\n\
      |     ~~~~~~~~~~~~~
   65 |     x y makearrow\n\
      |     ~~~~~~~~~~~~~~~~
   66 | } def\n"
      | ~~~~~~~~
postproc.c:296:6: note: 'sprintf' output between 777 and 843 bytes into a destination of size 512
  296 |      sprintf(buf, M1, Offset.y, Offset.x, Offset.y, Offset.x,
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  297 |                  -Offset.x, -Offset.y);
      |                  ~~~~~~~~~~~~~~~~~~~~~
  CC       routespl.lo
  CC       splines.lo
  CC       psusershape.lo
psusershape.c: In function 'user_init':
psusershape.c:49:30: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   49 |     int saw_bb, must_inline, rc;
      |                              ^~
In file included from render.h:47,
                 from psusershape.c:20:
psusershape.c: In function 'ps_string':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
psusershape.c:303:5: note: in expansion of macro 'agxbputc'
  303 |     agxbputc (&xb, RPAREN);
      |     ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
psusershape.c:305:9: note: in expansion of macro 'agxbuse'
  305 |     s = agxbuse(&xb);
      |         ^~~~~~~
psusershape.c:268:9: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
  268 |     int rc;
      |         ^~
  CC       timing.lo
  CC       labels.lo
labels.c: In function 'xml_url_string':
labels.c:561:21: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
  561 |     char *p, *sub, *prev = NULL;
      |                     ^~~~
  CC       ns.lo
  CC       shapes.lo
  CC       utils.lo
utils.c: In function 'chkPort':
utils.c:690:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
  690 |     else
      |     ^~~~
utils.c:692:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
  692 |  pt.name = s;
      |  ^~
In file included from render.h:47,
                 from utils.c:14:
utils.c: In function 'clustNode':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils.c:950:5: note: in expansion of macro 'agxbputc'
  950 |     agxbputc(xb, ':');
      |     ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
utils.c:954:29: note: in expansion of macro 'agxbuse'
  954 |     cn = agnode(agroot(cg), agxbuse(xb));
      |                             ^~~~~~~
utils.c: In function 'scanEntity':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils.c:1359:5: note: in expansion of macro 'agxbputc'
 1359 |     agxbputc(xb, '&');
      |     ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils.c:1369:5: note: in expansion of macro 'agxbputc'
 1369 |     agxbputc(xb, '#');
      |     ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils.c:1371:5: note: in expansion of macro 'agxbputc'
 1371 |     agxbputc(xb, ';');
      |     ^~~~~~~~
utils.c: In function 'htmlEntityUTF8':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
utils.c:1515:18: note: in expansion of macro 'agxbuse'
 1515 |     ns = strdup (agxbuse(&xb));
      |                  ^~~~~~~
utils.c:1456:9: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
 1456 |     int rc;
      |         ^~
In file included from render.h:47,
                 from utils.c:14:
utils.c: In function 'latin1ToUTF8':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
utils.c:1555:18: note: in expansion of macro 'agxbuse'
 1555 |     ns = strdup (agxbuse(&xb));
      |                  ^~~~~~~
utils.c:1531:9: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
 1531 |     int rc;
      |         ^~
In file included from render.h:47,
                 from utils.c:14:
utils.c: In function 'utf8ToLatin1':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
utils.c:1587:18: note: in expansion of macro 'agxbuse'
 1587 |     ns = strdup (agxbuse(&xb));
      |                  ^~~~~~~
utils.c:1573:9: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
 1573 |     int rc;
      |         ^~
utils.c: In function 'fix_fc':
utils.c:1891:9: warning: unused variable 'cur' [-Wunused-variable]
 1891 |     int cur=0;
      |         ^~~
utils.c:1890:10: warning: unused variable 'buf2' [-Wunused-variable]
 1890 |     char buf2[28192];
      |          ^~~~
utils.c:1889:10: warning: unused variable 'buf' [-Wunused-variable]
 1889 |     char buf[28192];
      |          ^~~
  CC       geom.lo
geom.c:24: warning: "inline" redefined
   24 | #define inline
      | 
In file included from geom.c:22:
geomprocs.h:57: note: this is the location of the previous definition
   57 | #define inline __inline
      | 
  CC       output.lo
In file included from render.h:47,
                 from output.c:14:
output.c: In function 'attach_attrs_and_arrows':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
output.c:350:22: note: in expansion of macro 'agxbuse'
  350 |      agset(n, "pos", agxbuse(&xb));
      |                      ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
output.c:373:24: note: in expansion of macro 'agxbuse'
  373 |      agset(n, "rects", agxbuse(&xb));
      |                        ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
output.c:391:4: note: in expansion of macro 'agxbputc'
  391 |    agxbputc(&xb, ' ');
      |    ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
output.c:403:32: note: in expansion of macro 'agxbuse'
  403 |   agxset(n, N_vertices->index, agxbuse(&xb));
      |                                ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
output.c:417:4: note: in expansion of macro 'agxbputc'
  417 |    agxbputc(&xb, ';');
      |    ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
output.c:434:8: note: in expansion of macro 'agxbputc'
  434 |        agxbputc(&xb, ' ');
      |        ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
output.c:440:19: note: in expansion of macro 'agxbuse'
  440 |   agset(e, "pos", agxbuse(&xb));
      |                   ^~~~~~~
  CC       emit.lo
In file included from render.h:47,
                 from emit.c:25:
emit.c: In function 'getObjId':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c:212:2: note: in expansion of macro 'agxbputc'
  212 |  agxbputc (xb, '_');
      |  ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
emit.c:218:12: note: in expansion of macro 'agxbuse'
  218 |     return agxbuse(xb);
      |            ^~~~~~~
emit.c: In function 'emit_xdot':
emit.c:941:11: warning: variable 'fontname' set but not used [-Wunused-but-set-variable]
  941 |     char* fontname;
      |           ^~~~~~~~
emit.c:940:12: warning: variable 'fontsize' set but not used [-Wunused-but-set-variable]
  940 |     double fontsize;
      |            ^~~~~~~~
In file included from render.h:47,
                 from emit.c:25:
emit.c: In function 'selectedlayer':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
emit.c:1152:22: note: in expansion of macro 'agxbuse'
 1152 |     w1 = w0 = strtok(agxbuse(&xb), gvc->layerDelims);
      |                      ^~~~~~~
emit.c: In function 'nodeIntersect':
emit.c:2247:11: warning: variable 'target' set but not used [-Wunused-but-set-variable]
 2247 |     char* target;
      |           ^~~~~~
emit.c:2246:11: warning: variable 'tooltip' set but not used [-Wunused-but-set-variable]
 2246 |     char* tooltip;
      |           ^~~~~~~
emit.c: In function 'xdotBB':
emit.c:2474:12: warning: variable 'sz' set but not used [-Wunused-but-set-variable]
 2474 |     pointf sz;
      |            ^~
emit.c: In function 'style_token':
emit.c:3262:16: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
 3262 |     int token, rc;
      |                ^~
In file included from render.h:47,
                 from emit.c:25:
emit.c: In function 'parse_style':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c:3356:3: note: in expansion of macro 'agxbputc'
 3356 |   agxbputc(&ps_xb, '\0'); /* terminate previous */
      |   ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
emit.c:3359:22: note: in expansion of macro 'agxbuse'
 3359 |      agxbput(&ps_xb, agxbuse(&xb));
      |                      ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c:3360:6: note: in expansion of macro 'agxbputc'
 3360 |      agxbputc(&ps_xb, '\0');
      |      ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
emit.c:3372:11: note: in expansion of macro 'agxbuse'
 3372 |     (void)agxbuse(&ps_xb);  /* adds final '\0' to buffer */
      |           ^~~~~~~
emit.c: In function 'emit_edge_label':
emit.c:2204:2: warning: 'type' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2204 |  sprintf (newid, "%s-%s", id, type);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c: In function 'getObjId':
emit.c:214:5: warning: 'pfx' may be used uninitialized in this function [-Wmaybe-uninitialized]
  214 |     agxbput (xb, pfx);
      |     ^~~~~~~~~~~~~~~~~
emit.c:215:5: warning: 'idnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
  215 |     sprintf (buf, "%ld", idnum);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c: In function 'xdotBB':
emit.c:2515:11: warning: 'fontname' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2515 |      sz = textsize (g, op->para, fontname, fontsize);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c:2515:11: warning: 'fontsize' may be used uninitialized in this function [-Wmaybe-uninitialized]
emit.c: In function 'emit_edge':
emit.c:1932:3: warning: 'bz.eflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1932 |   arrow_gen(job, EMIT_HDRAW, bz.ep, bz.list[bz.size - 1],
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1933 |    arrowsize, penwidth, bz.eflag);
      |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c:1792:12: note: 'bz.eflag' was declared here
 1792 |     bezier bz;
      |            ^~
emit.c:1921:3: warning: 'bz.sflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1921 |   arrow_gen(job, EMIT_TDRAW, bz.sp, bz.list[0],
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1922 |    arrowsize, penwidth, bz.sflag);
      |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c:1792:12: note: 'bz.sflag' was declared here
 1792 |     bezier bz;
      |            ^~
emit.c:1932:47: warning: 'bz.size' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1932 |   arrow_gen(job, EMIT_HDRAW, bz.ep, bz.list[bz.size - 1],
      |                                             ~~^~~~~
emit.c:1792:12: note: 'bz.size' was declared here
 1792 |     bezier bz;
      |            ^~
emit.c:1932:44: warning: 'bz.list' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1932 |   arrow_gen(job, EMIT_HDRAW, bz.ep, bz.list[bz.size - 1],
      |                                            ^
emit.c:1792:12: note: 'bz.list' was declared here
 1792 |     bezier bz;
      |            ^~
emit.c:1776:10: warning: 'endcolor' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1776 |          gvrender_set_fillcolor(job, endcolor);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
emit.c:1723:11: note: 'endcolor' was declared here
 1723 |     char* endcolor;
      |           ^~~~~~~~
emit.c:1746:19: warning: 'segs' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1746 |      if (s == segs->segs) {
      |               ~~~~^~~~~~
emit.c:1721:18: note: 'segs' was declared here
 1721 |     colorsegs_t* segs;
      |                  ^~~~
  CCLD     libcommon_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/common'
make[4]: Nothing to be done for 'install-exec-am'.
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/install -c -m 644 arith.h geom.h color.h types.h textpara.h usershape.h '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/common'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/common'
Making install in pack
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/pack'
  CC       ccomps.lo
  CC       pack.lo
pack.c: In function 'putGraphs':
pack.c:953:12: warning: 'pts' may be used uninitialized in this function [-Wmaybe-uninitialized]
  953 |     return pts;
      |            ^~~
  CCLD     libpack_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/pack'
make[4]: Nothing to be done for 'install-exec-am'.
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/install -c -m 644 pack.3 '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/install -c -m 644 pack.3.pdf '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/install -c -m 644 pack.h '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/pack'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/pack'
Making install in xdot
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/xdot'
  CC       xdot.lo
xdot.c: In function 'sprintXDot':
xdot.c:537:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
  537 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xdot.c:538:21: note: in expansion of macro 'agxbputc'
  538 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
xdot.c:606:16: note: in expansion of macro 'agxbuse'
  606 |     s = strdup(agxbuse(&xb));
      |                ^~~~~~~
  CCLD     libxdot.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
  CCLD     libxdot_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/xdot'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libxdot.la '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
libtool: install: /usr/bin/install -c .libs/libxdot.lai /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libxdot.la
libtool: install: /usr/bin/install -c .libs/libxdot.a /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libxdot.a
libtool: install: chmod 644 /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libxdot.a
libtool: install: ranlib /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libxdot.a
----------------------------------------------------------------------
Libraries have been installed in:
   /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-LLIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/install -c -m 644 xdot.3 '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/install -c -m 644 xdot.3.pdf '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/install -c -m 644 libxdot.pc '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/install -c -m 644 xdot.h '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/xdot'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/xdot'
Making install in gvc
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/gvc'
  CC       gvrender.lo
  CC       gvlayout.lo
  CC       gvdevice.lo
  CC       gvloadimage.lo
  CC       gvcontext.lo
  CC       gvjobs.lo
  CC       gvevent.lo
  CC       gvplugin.lo
In file included from gvplugin.c:23:
gvplugin.c: In function 'gvplugin_list':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvplugin.c:392:3: note: in expansion of macro 'agxbputc'
  392 |   agxbputc(&xb,' '); agxbput(&xb, (*pnext)->typestr);
      |   ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvplugin.c:393:3: note: in expansion of macro 'agxbputc'
  393 |   agxbputc(&xb,':'); agxbput(&xb, (*pnext)->package->name);
      |   ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvplugin.c:410:3: note: in expansion of macro 'agxbputc'
  410 |   agxbputc(&xb,' '); agxbput(&xb, q);
      |   ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvplugin.c:423:7: note: in expansion of macro 'agxbuse'
  423 |  bp = agxbuse(&xb);
      |       ^~~~~~~
  CC       gvconfig.lo
  CC       gvtextlayout.lo
  CC       gvusershape.lo
gvusershape.c: In function 'gvusershape_open':
gvusershape.c:415:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  415 |   if (!(us->data = (void*)find_user_shape(us->name)))
      |   ^~
gvusershape.c:417:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  417 |       free(us);
      |       ^~~~
  CC       gvc.lo
  CCLD     libgvc.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
  CCLD     libgvc_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/gvc'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libgvc.la '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
libtool: install: /usr/bin/install -c .libs/libgvc.lai /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvc.la
libtool: install: /usr/bin/install -c .libs/libgvc.a /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvc.a
libtool: install: chmod 644 /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvc.a
libtool: install: ranlib /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvc.a
----------------------------------------------------------------------
Libraries have been installed in:
   /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-LLIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/install -c -m 644 gvc.3 '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man3'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/install -c -m 644 gvc.3.pdf '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/install -c -m 644 libgvc.pc '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/install -c -m 644 gvc.h gvcext.h gvplugin.h gvcjob.h gvcommon.h gvplugin_render.h gvplugin_layout.h gvconfig.h gvplugin_textlayout.h gvplugin_device.h gvplugin_loadimage.h '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/gvc'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/gvc'
Making install in circogen
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/circogen'
  CC       circularinit.lo
  CC       nodelist.lo
  CC       block.lo
  CC       edgelist.lo
  CC       circular.lo
  CC       deglist.lo
  CC       blocktree.lo
  CC       blockpath.lo
  CC       circpos.lo
circpos.c: In function 'doBlock':
circpos.c:338:13: warning: 'midAngle' may be used uninitialized in this function [-Wmaybe-uninitialized]
  338 |  PSI(pi->n) = midAngle;
circpos.c:264:39: note: 'midAngle' was declared here
  264 |     double mindistAngle, rotateAngle, midAngle;
      |                                       ^~~~~~~~
  CC       nodeset.lo
  CCLD     libcircogen_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/circogen'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/circogen'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/circogen'
Making install in dotgen
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/dotgen'
  CC       acyclic.lo
  CC       class1.lo
  CC       class2.lo
  CC       cluster.lo
  CC       compound.lo
  CC       conc.lo
  CC       decomp.lo
  CC       fastgr.lo
  CC       flat.lo
  CC       dotinit.lo
  CC       mincross.lo
mincross.c: In function 'mincross.constprop':
mincross.c:374:9: warning: 'sepIndex' may be used uninitialized in this function [-Wmaybe-uninitialized]
  374 |     int sepIndex;
      |         ^~~~~~~~
  CC       position.lo
  CC       rank.lo
  CC       sameport.lo
  CC       dotsplines.lo
dotsplines.c: In function 'makeLineEdge':
dotsplines.c:1604:23: warning: right-hand operand of comma expression has no effect [-Wunused-value]
 1604 |  lp = ED_label(e)->pos, lp;
      |                       ^
dotsplines.c: In function 'completeregularpath':
dotsplines.c:1866:9: warning: variable 'pn' set but not used [-Wunused-but-set-variable]
 1866 |     int pn;
      |         ^~
dotsplines.c:1865:13: warning: variable 'pp' set but not used [-Wunused-but-set-variable]
 1865 |     pointf *pp;
      |             ^~
dotsplines.c: In function '_dot_splines':
dotsplines.c:993:18: warning: 'lmaxx' may be used uninitialized in this function [-Wmaybe-uninitialized]
  993 |      points[5].x = lmaxx;
      |      ~~~~~~~~~~~~^~~~~~~
dotsplines.c:882:19: note: 'lmaxx' was declared here
  882 |     double lminx, lmaxx;
      |                   ^~~~~
dotsplines.c:997:18: warning: 'lminx' may be used uninitialized in this function [-Wmaybe-uninitialized]
  997 |      points[7].x = lminx;
      |      ~~~~~~~~~~~~^~~~~~~
dotsplines.c:882:12: note: 'lminx' was declared here
  882 |     double lminx, lmaxx;
      |            ^~~~~
  CC       aspect.lo
aspect.c: In function 'computeCombiAR':
aspect.c:1614:12: warning: variable 'maxLayerIndex' set but not used [-Wunused-but-set-variable]
 1614 |     int i, maxLayerIndex;
      |            ^~~~~~~~~~~~~
aspect.c: In function 'rank3':
aspect.c:737:18: warning: 'maxLayerIndex' may be used uninitialized in this function [-Wmaybe-uninitialized]
  737 |    layerWidthInfo[maxLayerIndex].nNodeGroupsInLayer,
      |                  ^
aspect.c:702:9: note: 'maxLayerIndex' was declared here
  702 |     int maxLayerIndex;
      |         ^~~~~~~~~~~~~
aspect.c:750:2: warning: 'nextMaxWidth' may be used uninitialized in this function [-Wmaybe-uninitialized]
  749 |     if (nextMaxWidth <= layerWidthInfo[maxLayerIndex].width / 4
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  750 |  || nextMaxWidth >= layerWidthInfo[maxLayerIndex].width * 3 / 4)
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aspect.c:703:12: note: 'nextMaxWidth' was declared here
  703 |     double nextMaxWidth;
      |            ^~~~~~~~~~~~
  CCLD     libdotgen_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/dotgen'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/dotgen'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/dotgen'
Making install in fdpgen
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/fdpgen'
  CC       comp.lo
  CC       dbg.lo
  CC       grid.lo
  CC       fdpinit.lo
  CC       layout.lo
  CC       tlayout.lo
  CC       xlayout.lo
  CC       clusteredges.lo
  CCLD     libfdpgen_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/fdpgen'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/fdpgen'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/fdpgen'
Making install in neatogen
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/neatogen'
  CC       adjust.lo
In file included from ../../lib/common/render.h:44,
                 from neato.h:37,
                 from adjust.c:19:
adjust.c: In function 'getSizes':
../../lib/common/memory.h:39:30: warning: 'nedge_nodes' may be used uninitialized in this function [-Wmaybe-uninitialized]
   39 | #define N_GNEW(n,t)      (t*)gmalloc((n)*sizeof(t))
      |                              ^~~~~~~
adjust.c:670:12: note: 'nedge_nodes' was declared here
  670 |     int i, nedge_nodes;
      |            ^~~~~~~~~~~
adjust.c: In function 'removeOverlapWith':
adjust.c:1045:9: warning: 'ret' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1045 |     int ret;
      |         ^~~
  CC       circuit.lo
  CC       edges.lo
  CC       geometry.lo
  CC       heap.lo
  CC       hedges.lo
  CC       info.lo
  CC       neatoinit.lo
  CC       legal.lo
  CC       lu.lo
  CC       matinv.lo
  CC       memory.lo
  CC       poly.lo
  CC       printvis.lo
  CC       site.lo
  CC       solve.lo
  CC       neatosplines.lo
neatosplines.c: In function 'makeObstacle':
neatosplines.c:363:13: warning: variable 'desc' set but not used [-Wunused-but-set-variable]
  363 |     epsf_t *desc;
      |             ^~~~
neatosplines.c: In function '_spline_edges':
neatosplines.c:603:15: warning: unused variable 'rtr' [-Wunused-variable]
  603 |     router_t* rtr = 0;
      |               ^~~
  CC       stuff.lo
stuff.c: In function 'jitter_d':
stuff.c:332:23: warning: implicit declaration of function 'drand48'; did you mean 'drand'? [-Wimplicit-function-declaration]
  332 |  ND_pos(np)[k] = nG * drand48();
      |                       ^~~~~~~
      |                       drand
  CC       voronoi.lo
voronoi.c: In function 'voronoi':
voronoi.c:48:7: warning: 'newintstar.y' may be used uninitialized in this function [-Wmaybe-uninitialized]
   45 |  if (newsite != (struct Site *) NULL && (PQempty()
      |                                         ~~~~~~~~~~
   46 |       || newsite->coord.y <
      |       ~~~~~~~~~~~~~~~~~~~~~
   47 |       newintstar.y
      |       ~~~~~~~~~~~~
   48 |       || (newsite->coord.y ==
      |       ^~~~~~~~~~~~~~~~~~~~~~~
   49 |           newintstar.y
      |           ~~~~~~~~~~~~
   50 |           && newsite->coord.x <
      |           ~~~~~~~~~~~~~~~~~~~~~
   51 |           newintstar.x))) {
      |           ~~~~~~~~~~~~~~
  CC       stress.lo
stress.c: In function 'mdsModel':
stress.c:1388:2: warning: 'delta' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1388 |  fprintf (stderr, "mdsModel: delta = %f\n", delta);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  CC       kkutils.lo
  CC       matrix_ops.lo
  CC       embed_graph.lo
  CC       dijkstra.lo
  CC       conjgrad.lo
  CC       pca.lo
  CC       closest.lo
  CC       bfs.lo
  CC       constraint.lo
  CC       quad_prog_solve.lo
  CC       smart_ini_x.lo
  CC       constrained_majorization.lo
  CC       opt_arrangement.lo
  CC       overlap.lo
  CC       call_tri.lo
  CC       compute_hierarchy.lo
  CC       delaunay.lo
  CC       multispline.lo
  CCLD     libneatogen_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/neatogen'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/neatogen'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/neatogen'
Making install in twopigen
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/twopigen'
  CC       twopiinit.lo
  CC       circle.lo
circle.c: In function 'circleLayout':
circle.c:285:5: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
  285 |  xf += delx;
      |  ~~~^~~~~~~
circle.c:268:20: note: 'delx' was declared here
  268 |     double xf = 0, delx, d;
      |                    ^~~~
  CCLD     libtwopigen_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/twopigen'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/twopigen'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/twopigen'
Making install in sfdpgen
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/sfdpgen'
  CC       sfdpinit.lo
  CC       spring_electrical.lo
spring_electrical.c: In function 'rotate':
spring_electrical.c:1850:8: warning: variable 'y' set but not used [-Wunused-but-set-variable]
 1850 |   real y[4], axis[2], center[2], x0, x1;
      |        ^
  CC       LinkedList.lo
  CC       sparse_solve.lo
  CC       post_process.lo
post_process.c: In function 'StressMajorizationSmoother2_new':
post_process.c:110:36: warning: variable 'dd' set but not used [-Wunused-but-set-variable]
  110 |   real *avg_dist, diag_d, diag_w, *dd, dist, s = 0, stop = 0, sbot = 0;
      |                                    ^~
post_process.c: In function 'StressMajorizationSmoother_smooth':
post_process.c:578:102: warning: variable 'res' set but not used [-Wunused-but-set-variable]
  578 |   real *w, *dd, *d, *y = NULL, *x0 = NULL, *x00 = NULL, diag, diff = 1, *lambda = sm->lambda, maxit, res, alpha = 0., M = 0.;
      |                                                                                                      ^~~
post_process.c:578:9: warning: variable 'w' set but not used [-Wunused-but-set-variable]
  578 |   real *w, *dd, *d, *y = NULL, *x0 = NULL, *x00 = NULL, diag, diff = 1, *lambda = sm->lambda, maxit, res, alpha = 0., M = 0.;
      |         ^
post_process.c:577:32: warning: variable 'jw' set but not used [-Wunused-but-set-variable]
  577 |   int i, j, m, *id, *jd, *iw, *jw, idiag, flag = 0, iter = 0;
      |                                ^~
post_process.c:577:27: warning: variable 'iw' set but not used [-Wunused-but-set-variable]
  577 |   int i, j, m, *id, *jd, *iw, *jw, idiag, flag = 0, iter = 0;
      |                           ^~
post_process.c: In function 'TriangleSmoother_new':
post_process.c:698:68: warning: variable 'jd' set but not used [-Wunused-but-set-variable]
  698 |   int i, j, k, m = A->m, *ia = A->ia, *ja = A->ja, *iw, *jw, *id, *jd, jdiag, nz;
      |                                                                    ^~
post_process.c:698:63: warning: variable 'id' set but not used [-Wunused-but-set-variable]
  698 |   int i, j, k, m = A->m, *ia = A->ia, *ja = A->ja, *iw, *jw, *id, *jd, jdiag, nz;
      |                                                               ^~
  CC       stress_model.lo
  CC       uniform_stress.lo
uniform_stress.c: In function 'uniform_stress':
uniform_stress.c:112:8: warning: variable 'res' set but not used [-Wunused-but-set-variable]
  112 |   real res;
      |        ^~~
  CC       QuadTree.lo
  CC       Multilevel.lo
Multilevel.c: In function 'maximal_independent_vertex_set':
Multilevel.c:87:30: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   87 |   int i, ii, j, *ia, *ja, m, n, *p = NULL;
      |                              ^
Multilevel.c: In function 'maximal_independent_vertex_set_RS':
Multilevel.c:138:57: warning: variable 'removed' set but not used [-Wunused-but-set-variable]
  138 |   int i, jj, ii, *p = NULL, j, k, *ia, *ja, m, n, gain, removed, nf = 0;
      |                                                         ^~~~~~~
Multilevel.c:138:48: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  138 |   int i, jj, ii, *p = NULL, j, k, *ia, *ja, m, n, gain, removed, nf = 0;
      |                                                ^
Multilevel.c: In function 'maximal_independent_edge_set_heavest_edge_pernode_leaves_first':
Multilevel.c:327:30: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  327 |   int i, ii, j, *ia, *ja, m, n, *p = NULL, q;
      |                              ^
Multilevel.c: In function 'maximal_independent_edge_set_heavest_edge_pernode_supernodes_first':
Multilevel.c:502:30: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  502 |   int i, ii, j, *ia, *ja, m, n, *p = NULL;
      |                              ^
Multilevel.c: In function 'maximal_independent_edge_set_heavest_cluster_pernode_leaves_first':
Multilevel.c:646:30: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  646 |   int i, ii, j, *ia, *ja, m, n, *p = NULL, q, iv;
      |                              ^
  CC       PriorityQueue.lo
  CCLD     libsfdpgen_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/sfdpgen'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/sfdpgen'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/sfdpgen'
Making install in osage
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/osage'
  CC       osageinit.lo
  CCLD     libosage_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/osage'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/osage'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib/osage'
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib'
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib'
make[2]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/lib'
Making install in plugin
make[2]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin'
Making install in core
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/core'
  CC       gvplugin_core.lo
  CC       gvrender_core_dot.lo
In file included from gvrender_core_dot.c:32:
gvrender_core_dot.c: In function 'xdot_str':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_dot.c:100:5: note: in expansion of macro 'agxbputc'
  100 |     agxbputc(xbufs[emit_state], ' ');
      |     ^~~~~~~~
gvrender_core_dot.c: In function 'xdot_points':
gvrender_core_dot.c:107:12: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
  107 |     int i, rc;
      |            ^~
In file included from gvrender_core_dot.c:32:
gvrender_core_dot.c: In function 'xdot_style':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_dot.c:162:13: note: in expansion of macro 'agxbputc'
  162 |             agxbputc(&xbuf, '(');
      |             ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_dot.c:166:21: note: in expansion of macro 'agxbputc'
  166 |                     agxbputc(&xbuf, ',');
      |                     ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_dot.c:172:13: note: in expansion of macro 'agxbputc'
  172 |             agxbputc(&xbuf, ')');
      |             ^~~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:174:30: note: in expansion of macro 'agxbuse'
  174 |         xdot_str (job, "S ", agxbuse(&xbuf));
      |                              ^~~~~~~
gvrender_core_dot.c: In function 'xdot_end_node':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:186:31: note: in expansion of macro 'agxbuse'
  186 |  agxset(n, xd->n_draw->index, agxbuse(xbufs[EMIT_NDRAW]));
      |                               ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:192:33: note: in expansion of macro 'agxbuse'
  192 |  agxset(n, xd->n_l_draw->index, agxbuse(xbufs[EMIT_NLABEL]));
      |                                 ^~~~~~~
gvrender_core_dot.c: In function 'xdot_end_edge':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:206:31: note: in expansion of macro 'agxbuse'
  206 |  agxset(e, xd->e_draw->index, agxbuse(xbufs[EMIT_EDRAW]));
      |                               ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:212:31: note: in expansion of macro 'agxbuse'
  212 |  agxset(e, xd->t_draw->index, agxbuse(xbufs[EMIT_TDRAW]));
      |                               ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:218:31: note: in expansion of macro 'agxbuse'
  218 |  agxset(e, xd->h_draw->index, agxbuse(xbufs[EMIT_HDRAW]));
      |                               ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:224:32: note: in expansion of macro 'agxbuse'
  224 |  agxset(e, xd->e_l_draw->index,agxbuse(xbufs[EMIT_ELABEL]));
      |                                ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:230:32: note: in expansion of macro 'agxbuse'
  230 |  agxset(e, xd->tl_draw->index, agxbuse(xbufs[EMIT_TLABEL]));
      |                                ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:236:32: note: in expansion of macro 'agxbuse'
  236 |  agxset(e, xd->hl_draw->index, agxbuse(xbufs[EMIT_HLABEL]));
      |                                ^~~~~~~
gvrender_core_dot.c: In function 'xdot_end_cluster':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:289:42: note: in expansion of macro 'agxbuse'
  289 |     agxset(cluster_g, xd->g_draw->index, agxbuse(xbufs[EMIT_CDRAW]));
      |                                          ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:295:41: note: in expansion of macro 'agxbuse'
  295 |  agxset(cluster_g, xd->g_l_draw->index, agxbuse(xbufs[EMIT_CLABEL]));
      |                                         ^~~~~~~
gvrender_core_dot.c: In function 'xdot_end_graph':
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:436:31: note: in expansion of macro 'agxbuse'
  436 |  agxset(g, xd->g_draw->index, agxbuse(xbufs[EMIT_GDRAW]));
      |                               ^~~~~~~
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value]
   68 |           (int)(*(X)->ptr++ = ((unsigned char)C)))
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc'
   74 | #define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf))
      |                     ^~~~~~~~
gvrender_core_dot.c:444:33: note: in expansion of macro 'agxbuse'
  444 |  agxset(g, xd->g_l_draw->index, agxbuse(xbufs[EMIT_GLABEL]));
      |                                 ^~~~~~~
  CC       gvrender_core_fig.lo
  CC       gvrender_core_map.lo
  CC       gvrender_core_ps.lo
  CC       gvrender_core_svg.lo
  CC       gvrender_core_tk.lo
gvrender_core_tk.c: In function 'tkgen_print_tags':
gvrender_core_tk.c:58:18: warning: variable 'ObjId' set but not used [-Wunused-but-set-variable]
   58 |     unsigned int ObjId;
      |                  ^~~~~
gvrender_core_tk.c:57:21: warning: variable 'ObjPart' set but not used [-Wunused-but-set-variable]
   57 |     char *ObjType, *ObjPart;
      |                     ^~~~~~~
gvrender_core_tk.c:152:5: warning: 'ObjHandle' may be used uninitialized in this function [-Wmaybe-uninitialized]
  152 |     gvprintf(job, " -tags {%d%s%d}", ObjFlag, ObjType, ObjHandle);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gvrender_core_tk.c:152:5: warning: 'ObjFlag' may be used uninitialized in this function [-Wmaybe-uninitialized]
gvrender_core_tk.c:152:5: warning: 'ObjType' may be used uninitialized in this function [-Wmaybe-uninitialized]
  CC       gvrender_core_vml.lo
gvrender_core_vml.c: In function 'vml_ellipse':
gvrender_core_vml.c:452:38: warning: variable 'bottom' set but not used [-Wunused-but-set-variable]
  452 |     double dx, dy, left, right, top, bottom;
      |                                      ^~~~~~
gvrender_core_vml.c:452:26: warning: variable 'right' set but not used [-Wunused-but-set-variable]
  452 |     double dx, dy, left, right, top, bottom;
      |                          ^~~~~
  CC       gvloadimage_core.lo
gvloadimage_core.c:19:22: warning: extra tokens at end of #include directive
   19 | #include <unistd.h>  # for read() declaration
      |                      ^
  CCLD     libgvplugin_core.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
  CCLD     libgvplugin_core_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/core'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libgvplugin_core.la '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
libtool: install: /usr/bin/install -c .libs/libgvplugin_core.lai /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_core.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_core.a /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_core.a
libtool: install: chmod 644 /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_core.a
libtool: install: ranlib /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_core.a
----------------------------------------------------------------------
Libraries have been installed in:
   /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-LLIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/core'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/core'
Making install in dot_layout
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/dot_layout'
  CC       gvplugin_dot_layout.lo
  CC       gvlayout_dot_layout.lo
  CCLD     libgvplugin_dot_layout.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
  CCLD     libgvplugin_dot_layout_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/dot_layout'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libgvplugin_dot_layout.la '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.lai /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_dot_layout.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.a /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_dot_layout.a
libtool: install: chmod 644 /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_dot_layout.a
libtool: install: ranlib /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_dot_layout.a
----------------------------------------------------------------------
Libraries have been installed in:
   /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-LLIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/dot_layout'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/dot_layout'
Making install in neato_layout
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/neato_layout'
  CC       gvplugin_neato_layout.lo
  CC       gvlayout_neato_layout.lo
  CCLD     libgvplugin_neato_layout.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
  CCLD     libgvplugin_neato_layout_C.la
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: `u' modifier ignored since `D' is the default (see `U')
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/neato_layout'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libgvplugin_neato_layout.la '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib'
libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.lai /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_neato_layout.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.a /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_neato_layout.a
libtool: install: chmod 644 /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_neato_layout.a
libtool: install: ranlib /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/libgvplugin_neato_layout.a
----------------------------------------------------------------------
Libraries have been installed in:
   /f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-LLIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/neato_layout'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin/neato_layout'
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin'
make[4]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin'
make[2]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz/plugin'
make[2]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz'
make[3]: Entering directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz'
make[3]: Nothing to be done for 'install-exec-am'.
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man7'
 /usr/bin/install -c -m 644 graphviz.7 '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/man/man7'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/install -c -m 644 graphviz_version.h '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz'
 /usr/bin/mkdir -p '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc'
 /usr/bin/install -c -m 644 AUTHORS COPYING ChangeLog NEWS cpl1.0.txt '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/share/graphviz/doc'
make[3]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz'
make[2]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz'
make[1]: Leaving directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/graphviz'
cp: -r not specified; omitting directory '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/pkgconfig'
cp: cannot stat '/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/lib/graphviz/*': No such file or directory
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for deflateBound in -lz... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for whether compiler has bool... yes
configure.win: Using the following compilation and linking flags for Rgraphviz
configure.win:    PKG_CFLAGS= -I/f/biocbuild/bbs-3.16-bioc/tmpdir/RtmpgrWh3L/R.INSTALLdbc76ec69af/Rgraphviz/src/libwinucrt/include/graphviz
configure.win:    PKG_LIBS=libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz
configure.win:    GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1
configure.win: Compiling using Graphviz version: '2.28.0'.
configure.win: Using bundled Graphviz: 'TRUE'.
configure.win: creating ./config.status
config.status: creating R/graphviz_build_version.R
config.status: creating src/Makevars
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c LL_funcs.c -o LL_funcs.o
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:430:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
  430 |     Agnode_t *head, *tail, *curNode;
      |                             ^~~~~~~
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rgraphviz.c -o Rgraphviz.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c RgraphvizInit.c -o RgraphvizInit.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c agopen.c -o agopen.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c agread.c -o agread.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c agwrite.c -o agwrite.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c bezier.c -o bezier.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c buildEdgeList.c -o buildEdgeList.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c buildNodeList.c -o buildNodeList.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c doLayout.c -o doLayout.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c graphvizVersion.c -o graphvizVersion.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
gcc -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o libwinucrt/lib/libxdot.a libwinucrt/lib/libgvplugin_dot_layout.a libwinucrt/lib/libgvplugin_neato_layout.a libwinucrt/lib/libgvplugin_core.a libwinucrt/lib/libgvc.a libwinucrt/lib/libpathplan.a libwinucrt/lib/libgraph.a libwinucrt/lib/libcdt.a -lz -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/Rgraphviz.buildbin-libdir/00LOCK-Rgraphviz/00new/Rgraphviz/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Rgraphviz' as Rgraphviz_2.41.1.zip
* DONE (Rgraphviz)
* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
package 'Rgraphviz' successfully unpacked and MD5 sums checked