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This page was generated on 2023-09-23 11:37:59 -0400 (Sat, 23 Sep 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4659
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4394
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4408
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4397
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1691/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Repitools 1.47.0  (landing page)
Mark Robinson
Snapshot Date: 2023-09-22 14:05:07 -0400 (Fri, 22 Sep 2023)
git_url: https://git.bioconductor.org/packages/Repitools
git_branch: devel
git_last_commit: 75707ac
git_last_commit_date: 2023-04-25 10:20:10 -0400 (Tue, 25 Apr 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

BUILD BIN results for Repitools on palomino4


To the developers/maintainers of the Repitools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Repitools
Version: 1.47.0
Command: rm -rf Repitools.buildbin-libdir && mkdir Repitools.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=Repitools.buildbin-libdir Repitools_1.47.0.tar.gz
StartedAt: 2023-09-23 08:41:02 -0400 (Sat, 23 Sep 2023)
EndedAt: 2023-09-23 08:42:12 -0400 (Sat, 23 Sep 2023)
EllapsedTime: 70.6 seconds
RetCode: 0
Status:   OK  
PackageFile: Repitools_1.47.0.zip
PackageFileSize: 2.459 MiB

Command output

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###
### Running command:
###
###   rm -rf Repitools.buildbin-libdir && mkdir Repitools.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=Repitools.buildbin-libdir Repitools_1.47.0.tar.gz
###
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* installing *source* package 'Repitools' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c const.c -o const.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c hyp2f1.c -o hyp2f1.o
In file included from hyp2f1.c:81:
./mconf.h:100: warning: "DOMAIN" redefined
  100 | #define DOMAIN          1       /* argument domain error */
      | 
In file included from F:/biocbuild/bbs-3.18-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition
   29 | #define DOMAIN          _DOMAIN
      | 
./mconf.h:101: warning: "SING" redefined
  101 | #define SING            2       /* argument singularity */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition
   30 | #define SING            _SING
      | 
./mconf.h:102: warning: "OVERFLOW" redefined
  102 | #define OVERFLOW        3       /* overflow range error */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition
   31 | #define OVERFLOW        _OVERFLOW
      | 
./mconf.h:103: warning: "UNDERFLOW" redefined
  103 | #define UNDERFLOW       4       /* underflow range error */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition
   32 | #define UNDERFLOW       _UNDERFLOW
      | 
./mconf.h:104: warning: "TLOSS" redefined
  104 | #define TLOSS           5       /* total loss of precision */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition
   33 | #define TLOSS           _TLOSS
      | 
./mconf.h:105: warning: "PLOSS" redefined
  105 | #define PLOSS           6       /* partial loss of precision */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition
   34 | #define PLOSS           _PLOSS
      | 
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mtherr.c -o mtherr.o
In file included from mtherr.c:58:
./mconf.h:100: warning: "DOMAIN" redefined
  100 | #define DOMAIN          1       /* argument domain error */
      | 
In file included from F:/biocbuild/bbs-3.18-bioc/R/include/R.h:45,
                 from mtherr.c:56:
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition
   29 | #define DOMAIN          _DOMAIN
      | 
./mconf.h:101: warning: "SING" redefined
  101 | #define SING            2       /* argument singularity */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition
   30 | #define SING            _SING
      | 
./mconf.h:102: warning: "OVERFLOW" redefined
  102 | #define OVERFLOW        3       /* overflow range error */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition
   31 | #define OVERFLOW        _OVERFLOW
      | 
./mconf.h:103: warning: "UNDERFLOW" redefined
  103 | #define UNDERFLOW       4       /* underflow range error */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition
   32 | #define UNDERFLOW       _UNDERFLOW
      | 
./mconf.h:104: warning: "TLOSS" redefined
  104 | #define TLOSS           5       /* total loss of precision */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition
   33 | #define TLOSS           _TLOSS
      | 
./mconf.h:105: warning: "PLOSS" redefined
  105 | #define PLOSS           6       /* partial loss of precision */
      | 
c:\rtools43\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition
   34 | #define PLOSS           _PLOSS
      | 
gcc -shared -s -static-libgcc -o Repitools.dll tmp.def const.o hyp2f1.o mtherr.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/Repitools.buildbin-libdir/00LOCK-Repitools/00new/Repitools/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Repitools' as Repitools_1.47.0.zip
* DONE (Repitools)