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This page was generated on 2024-03-28 11:41:11 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1662/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rbec 1.11.0  (landing page)
Pengfan Zhang
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/Rbec
git_branch: devel
git_last_commit: 59e1a5a
git_last_commit_date: 2023-10-24 11:32:34 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

INSTALL results for Rbec on kunpeng2


To the developers/maintainers of the Rbec package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rbec.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: Rbec
Version: 1.11.0
Command: /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD INSTALL Rbec
StartedAt: 2024-03-27 20:02:07 -0000 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 20:02:24 -0000 (Wed, 27 Mar 2024)
EllapsedTime: 16.7 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD INSTALL Rbec
###
##############################################################################
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* installing to library ‘/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library’
* installing *source* package ‘Rbec’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
In file included from ../inst/include/Rbec.h:7,
                 from RcppExports.cpp:4:
../inst/include/Rbec_RcppExports.h:14:14: warning: ‘void Rbec::{anonymous}::validateSignature(const char*)’ defined but not used [-Wunused-function]
   14 |         void validateSignature(const char* sig) {
      |              ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c kmer_dist.cpp -o kmer_dist.o
kmer_dist.cpp: In function ‘Rcpp::NumericVector kmer_dist(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, int)’:
kmer_dist.cpp:33:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   33 |   for(int i=0;i<nseqs;i++) {
      |               ~^~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c rcpp_test.cpp -o rcpp_test.o
rcpp_test.cpp:3:10: fatal error: emmintrin.h: No such file or directory
    3 | #include "emmintrin.h"
      |          ^~~~~~~~~~~~~
compilation terminated.
make: *** [/home/biocbuild/R/R-4.4-devel-2024.03.20/etc/Makeconf:204: rcpp_test.o] Error 1
ERROR: compilation failed for package ‘Rbec’
* removing ‘/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rbec’