Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-02-01 11:06:15 -0500 (Wed, 01 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4483 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" | 4249 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4272 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the RNAsense package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAsense.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1694/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RNAsense 1.13.0 (landing page) Marcus Rosenblatt
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
Package: RNAsense |
Version: 1.13.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RNAsense.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RNAsense_1.13.0.tar.gz |
StartedAt: 2023-01-31 23:22:31 -0500 (Tue, 31 Jan 2023) |
EndedAt: 2023-01-31 23:36:41 -0500 (Tue, 31 Jan 2023) |
EllapsedTime: 850.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: RNAsense.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RNAsense.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RNAsense_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/RNAsense.Rcheck’ * using R Under development (unstable) (2023-01-10 r83596) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘RNAsense/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RNAsense’ version ‘1.13.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RNAsense’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE combineResults: no visible binding for global variable ‘resultSwitch’ combineResults: no visible binding for global variable ‘resultFC’ combineResults : getFCupdown: no visible binding for global variable ‘resultFC’ combineResults : getFCupdown: no visible binding for global variable ‘name’ combineResults : getFCupdown: no visible binding for global variable ‘FCdetect’ getFC: no visible binding for global variable ‘mydata’ getFC: no visible binding for global variable ‘analyzeConditions’ getFC: no visible binding for global variable ‘times’ getSwitch: no visible binding for global variable ‘mydata’ getSwitch: no visible binding for global variable ‘times’ outputGeneTables: no visible binding for global variable ‘resultCombined’ outputGeneTables: no visible binding for global variable ‘times’ outputGeneTables: no visible binding for global variable ‘analyzeConditions’ outputGeneTables: no visible binding for global variable ‘timepoint’ outputGeneTables: no visible binding for global variable ‘FCdown’ outputGeneTables: no visible binding for global variable ‘FCup’ outputGeneTables: no visible binding for global variable ‘experiment’ plotSSGS: no visible binding for global variable ‘resultCombined’ plotSSGS: no visible binding for global variable ‘times’ plotSSGS: no visible binding for global variable ‘analyzeConditions’ plotSSGS : getFT: no visible binding for global variable ‘result’ plotSSGS : getFT: no visible binding for global variable ‘timepoint’ plotSSGS : getFT: no visible binding for global variable ‘FCdown’ plotSSGS : getFT: no visible binding for global variable ‘FCup’ plotSSGS : <anonymous> : <anonymous> : <anonymous> : <anonymous>: no visible binding for global variable ‘experiment’ plotSSGS: no visible binding for global variable ‘xaxis’ plotSSGS: no visible binding for global variable ‘cluster’ Undefined global functions or variables: FCdetect FCdown FCup analyzeConditions cluster experiment mydata name result resultCombined resultFC resultSwitch timepoint times xaxis * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Missing link or links in documentation object 'getFC.Rd': ‘DataFrame’ Missing link or links in documentation object 'getSwitch.Rd': ‘DataFrame’ See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed combineResults 116.002 1.288 117.292 outputGeneTables 115.946 0.376 116.324 plotSSGS 112.941 0.432 113.375 getSwitch 73.907 0.272 74.180 getFC 23.993 0.132 24.125 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘example.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.17-bioc/meat/RNAsense.Rcheck/00check.log’ for details.
RNAsense.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RNAsense ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘RNAsense’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RNAsense)
RNAsense.Rcheck/RNAsense-Ex.timings
name | user | system | elapsed | |
combineResults | 116.002 | 1.288 | 117.292 | |
getFC | 23.993 | 0.132 | 24.125 | |
getSwitch | 73.907 | 0.272 | 74.180 | |
outputGeneTables | 115.946 | 0.376 | 116.324 | |
plotSSGS | 112.941 | 0.432 | 113.375 | |