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This page was generated on 2022-07-01 11:05:27 -0400 (Fri, 01 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4147
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4159
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RNAinteract on nebbiolo2


To the developers/maintainers of the RNAinteract package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAinteract.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1658/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAinteract 1.45.0  (landing page)
Mike Smith
Snapshot Date: 2022-06-30 14:00:04 -0400 (Thu, 30 Jun 2022)
git_url: https://git.bioconductor.org/packages/RNAinteract
git_branch: master
git_last_commit: 3bdb7a0
git_last_commit_date: 2022-04-26 11:07:00 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RNAinteract
Version: 1.45.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:RNAinteract.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --no-vignettes --timings RNAinteract_1.45.0.tar.gz
StartedAt: 2022-06-30 21:33:21 -0400 (Thu, 30 Jun 2022)
EndedAt: 2022-06-30 21:36:15 -0400 (Thu, 30 Jun 2022)
EllapsedTime: 173.4 seconds
RetCode: 0
Status:   OK  
CheckDir: RNAinteract.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:RNAinteract.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --no-vignettes --timings RNAinteract_1.45.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/RNAinteract.Rcheck’
* using R version 4.2.0 Patched (2022-06-02 r82447)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RNAinteract/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RNAinteract’ version ‘1.45.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RNAinteract’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ICS’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-bioc/meat/RNAinteract.Rcheck/00check.log’
for details.



Installation output

RNAinteract.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL RNAinteract
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’
* installing *source* package ‘RNAinteract’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNAinteract)

Tests output


Example timings

RNAinteract.Rcheck/RNAinteract-Ex.timings

nameusersystemelapsed
RNAinteract-class0.0020.0000.002
bindsamples0.0680.0080.076
computePI0.0130.0010.013
computePValues0.0780.0030.082
embedPCA0.0060.0050.010
estimateMainEffect1.1470.0801.227
getData0.0770.0000.077
getMain0.0060.0000.006
getReplicateData0.0160.0000.016
getSampleNames0.0030.0000.003
getScale0.0030.0000.003
grid.sgiHeatmap0.0460.0070.054
normalizeMainEffectQuery0.0390.0000.039
normalizeMainEffectTemplate0.0280.0000.028
normalizePlateEffect0.8680.0040.872
plotDoublePerturbation0.0320.0000.032
plotHeatmap0.0310.0040.035
reportAnnotation0.0160.0000.016
sgi0.0000.0030.004
sgisubset0.0040.0030.006
startReport0.0110.0020.013
summarizeSamples0.0740.0040.077