############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RImmPort_1.33.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/RImmPort.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.4 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RImmPort/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RImmPort’ version ‘1.33.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RImmPort’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE buildNewSqliteDb: no visible global function definition for ‘dbListTables’ Undefined global functions or variables: dbListTables * checking Rd files ... NOTE checkRd: (-1) SUPPDV.Rd:22-32: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPFA.Rd:23-28: Lost braces 23 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPLB.Rd:22-29: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPMH.Rd:23-30: Lost braces 23 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPPE.Rd:23-28: Lost braces 23 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPPF.Rd:22-38: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPVS.Rd:23-28: Lost braces 23 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPZA.Rd:22-39: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPZB.Rd:22-38: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPZC.Rd:22-37: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPZD.Rd:22-37: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) TS.Rd:20-41: Lost braces 20 | The following table enumerates the values in TSPARMCD and TSPARM variables { | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/RImmPort.Rcheck/00check.log’ for details.