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This page was generated on 2022-01-24 11:08:07 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ProteoDisco on riesling1


To the developers/maintainers of the ProteoDisco package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ProteoDisco.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1469/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ProteoDisco 1.1.3  (landing page)
Job van Riet
Snapshot Date: 2022-01-23 13:55:15 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/ProteoDisco
git_branch: master
git_last_commit: 24e9090
git_last_commit_date: 2021-12-06 05:08:39 -0500 (Mon, 06 Dec 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'BiocGenerics' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: ProteoDisco
Version: 1.1.3
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ProteoDisco
StartedAt: 2022-01-23 16:09:02 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 16:10:23 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 80.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ProteoDisco
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'ProteoDisco' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::mutate' by 'plyr::mutate' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'ProteoDisco'
** help
*** installing help indices
  converting help for package 'ProteoDisco'
    finding HTML links ... done
    ProteoDiscography                       html  
    ProteoDiscographyExample.hg19           html  
    checkProteotypicFragments               html  
    dot-checkReferenceAnchor                html  
    exportProteoDiscography                 html  
    generateJunctionModels                  html  
    generateProteoDiscography               html  
    getDiscography                          html  
    importGenomicVariants.MAF               html  
    importGenomicVariants                   html  
    importGenomicVariants.VCF               html  
    importSpliceJunctions                   html  
    importTranscriptSequences               html  
    incorporateGenomicVariants              html  
    mutantTranscripts                       html  
    setGenomicSequences                     html  
    setMutantTranscripts                    html  
    setTxDb                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::mutate' by 'plyr::mutate' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'ProteoDisco'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::mutate' by 'plyr::mutate' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'ProteoDisco'
Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'ProteoDisco'
** testing if installed package keeps a record of temporary installation path
* DONE (ProteoDisco)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'orthogene' is missing or broken
 done