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This page was generated on 2021-11-27 14:05:16 -0500 (Sat, 27 Nov 2021).

INSTALL results for PharmacoGx on riesling1

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PharmacoGx.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1393/2068HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PharmacoGx 2.7.0  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2021-11-26 14:50:14 -0500 (Fri, 26 Nov 2021)
git_url: https://git.bioconductor.org/packages/PharmacoGx
git_branch: master
git_last_commit: f3d1fbf
git_last_commit_date: 2021-10-26 12:29:36 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'CoreGx' which is not available

Summary

Package: PharmacoGx
Version: 2.7.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/PharmacoGx_2.7.0.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_2.7.0.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_2.7.0.zip && rm PharmacoGx_2.7.0.tar.gz PharmacoGx_2.7.0.zip
StartedAt: 2021-11-26 18:27:20 -0500 (Fri, 26 Nov 2021)
EndedAt: 2021-11-26 18:30:01 -0500 (Fri, 26 Nov 2021)
EllapsedTime: 160.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/PharmacoGx_2.7.0.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_2.7.0.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_2.7.0.zip && rm PharmacoGx_2.7.0.tar.gz PharmacoGx_2.7.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 75 3573k   75 2709k    0     0  3892k      0 --:--:-- --:--:-- --:--:-- 3892k
100 3573k  100 3573k    0     0  4234k      0 --:--:-- --:--:-- --:--:-- 4234k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'PharmacoGx' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PharmacoGx'
    finding HTML links ... done
    CCLEsmall                               html  
    CMAPsmall                               html  
    GDSCsmall                               html  
    HDAC_genes                              html  
    PharmacoSet-accessors                   html  
    PharmacoSet-class                       html  
    PharmacoSet-utils                       html  
    PharmacoSet                             html  
    PharmacoSet2                            html  
    PharmacoSig                             html  
    amcc                                    html  
    availablePSets                          html  
    callingWaterfall                        html  
    checkPsetStructure                      html  
    computeABC                              html  
    computeAUC                              html  
    computeAmax                             html  
    computeICn                              html  
    computeSlope                            html  
    connectivityScore                       html  
    cosinePerm                              html  
    dim-PharmacoSet-method                  html  
    dot-summarizeSensProfiles               html  
    downloadPSet                            html  
    downloadPertSig                         html  
    drugDoseResponseCurve                   html  
    drugInfo-set                            html  
    drugInfo                                html  
    drugNames-set                           html  
    drugNames                               html  
    drugPerturbationSig                     html  
    drugSensitivitySig-PharmacoSet-method   html  
    filterNoisyCurves                       html  
    geneDrugSensitivity                     html  
    gwc                                     html  
    intersectPSet                           html  
    logLogisticRegression                   html  
    mcc                                     html  
    plot.PharmacoSig                        html  
    show-PharmacoSet-method                 html  
    show-PharmacoSig-method                 html  
    showSigAnnot-PharmacoSig-method         html  
    sub-PharmacoSet-ANY-ANY-ANY-method      html  
    subsetTo-PharmacoSet-method             html  
    summarizeMolecularProfiles-PharmacoSet-method
                                            html  
    summarizeSensitivityProfiles-PharmacoSet-method
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'PharmacoGx' as PharmacoGx_2.7.0.zip
* DONE (PharmacoGx)
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
package 'PharmacoGx' successfully unpacked and MD5 sums checked