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###
### Running command:
###
###   rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=OmnipathR.buildbin-libdir OmnipathR_3.13.1.tar.gz
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* installing *source* package 'OmnipathR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-05-30 04:25:22] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-30 04:25:22] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:22] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-05-30 04:25:22] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-30 04:25:22] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-05-30 04:25:22] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-30 04:25:22] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-30 04:25:22] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-30 04:25:22] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:22] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:23] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:25] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:25] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 04:25:25] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'OmnipathR' as OmnipathR_3.13.1.zip
* DONE (OmnipathR)