##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.13.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OmnipathR.buildbin-libdir OmnipathR_3.13.1.tar.gz'
>>>>>>> 

* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-05-30 10:56:10] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-30 10:56:10] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:10] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-30 10:56:10] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-30 10:56:10] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-30 10:56:10] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-30 10:56:10] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-30 10:56:10] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-30 10:56:10] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:10] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:11] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:15] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:15] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-30 10:56:15] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)