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This page was generated on 2024-07-20 13:55 -0400 (Sat, 20 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4688
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4455
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1414/2248HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OCplus 1.79.0  (landing page)
Alexander Ploner
Snapshot Date: 2024-07-19 14:00 -0400 (Fri, 19 Jul 2024)
git_url: https://git.bioconductor.org/packages/OCplus
git_branch: devel
git_last_commit: 0559f22
git_last_commit_date: 2024-04-30 10:15:13 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for OCplus on lconway

To the developers/maintainers of the OCplus package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OCplus.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: OCplus
Version: 1.79.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OCplus_1.79.0.tar.gz
StartedAt: 2024-07-20 00:38:12 -0400 (Sat, 20 Jul 2024)
EndedAt: 2024-07-20 00:39:43 -0400 (Sat, 20 Jul 2024)
EllapsedTime: 91.2 seconds
RetCode: 0
Status:   OK  
CheckDir: OCplus.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OCplus_1.79.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/OCplus.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OCplus/DESCRIPTION’ ... OK
* this is package ‘OCplus’ version ‘1.79.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OCplus’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) DrawContourlines.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DrawContourlines.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DrawContourlines.Rd:22: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/OCplus.Rcheck/00check.log’
for details.


Installation output

OCplus.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OCplus
###
##############################################################################
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘OCplus’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OCplus)

Tests output


Example timings

OCplus.Rcheck/OCplus-Ex.timings

nameusersystemelapsed
EOC0.3540.1370.495
FDR0.0020.0000.003
MAsim.smyth1.1410.1151.279
OCshow1.4020.2081.640
TOC0.1780.0370.217
average.fdr1.3250.1911.530
fdr1d0.4230.0990.530
fdr2d0.5830.0970.682
plot.FDR.result0.9160.0801.002
plot.fdr1d.result0.7560.1000.871
plot.fdr2d.result1.2340.1341.381
samplesize4.1370.5004.804
smooth1d0.0180.0070.025
summary.fdr.result0.5170.0610.584
tMixture1.6860.3712.070