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This page was generated on 2022-01-24 11:07:54 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for MungeSumstats on riesling1


To the developers/maintainers of the MungeSumstats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MungeSumstats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1246/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MungeSumstats 1.3.1  (landing page)
Alan Murphy
Snapshot Date: 2022-01-23 13:55:15 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/MungeSumstats
git_branch: master
git_last_commit: feb8c98
git_last_commit_date: 2021-12-19 12:11:43 -0500 (Sun, 19 Dec 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MungeSumstats
Version: 1.3.1
Command: rm -rf MungeSumstats.buildbin-libdir && mkdir MungeSumstats.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MungeSumstats.buildbin-libdir MungeSumstats_1.3.1.tar.gz
StartedAt: 2022-01-23 21:08:47 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 21:10:05 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 78.0 seconds
RetCode: 0
Status:   OK  
PackageFile: MungeSumstats_1.3.1.zip
PackageFileSize: 3.266 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MungeSumstats.buildbin-libdir && mkdir MungeSumstats.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MungeSumstats.buildbin-libdir MungeSumstats_1.3.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'MungeSumstats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MungeSumstats'
    finding HTML links ... done
    api_query                               html  
    axel                                    html  
    check_access_token                      html  
    check_allele_flip                       html  
    check_allele_merge                      html  
    check_bi_allelic                        html  
    check_chr                               html  
    check_col_order                         html  
    check_dup_bp                            html  
    check_dup_col                           html  
    check_dup_snp                           html  
    check_effect_columns_nonzero            html  
    check_empty_cols                        html  
    check_four_step_col                     html  
    check_frq                               html  
    check_frq_maf                           html  
    check_info_score                        html  
    check_ldsc_format                       html  
    check_miss_data                         html  
    check_multi_gwas                        html  
    check_multi_rs_snp                      html  
    check_n_int                             html  
    check_n_num                             html  
    check_no_allele                         html  
    check_no_chr_bp                         html  
    check_no_rs_snp                         html  
    check_no_snp                            html  
    check_on_ref_genome                     html  
    check_pos_se                            html  
    check_range_p_val                       html  
    check_row_snp                           html  
    check_save_path                         html  
    check_signed_col                        html  
    check_small_p_val                       html  
    check_strand_ambiguous                  html  
    check_tabular                           html  
    check_two_step_col                      html  
    check_vcf                               html  
    check_vital_col                         html  
    check_zscore                            html  
    column_dictionary                       html  
    compute_nsize                           html  
    compute_sample_size                     html  
    compute_sample_size_n                   html  
    compute_sample_size_neff                html  
    convert_sumstats                        html  
    download_vcf                            html  
    downloader                              html  
    dt_to_granges                           html  
    find_sumstats                           html  
    format_sumstats                         html  
    get_access_token                        html  
    get_chain_file                          html  
    get_genome_build                        html  
    get_genome_builds                       html  
    get_query_content                       html  
    get_unique_name_log_file                html  
    get_vcf_sample_ids                      html  
    gwasinfo                                html  
    hg19ToHg38                              html  
    hg38ToHg19                              html  
    ieu-a-298                               html  
    import_sumstats                         html  
    index_tabular                           html  
    infer_vcf_sample_ids                    html  
    legacy_ids                              html  
    liftover                                html  
    list_sumstats                           html  
    load_ref_genome_data                    html  
    load_snp_loc_data                       html  
    logs_example                            html  
    message_parallel                        html  
    messager                                html  
    parse_dropped_INFO                      html  
    parse_dropped_chrom                     html  
    parse_dropped_duplicates                html  
    parse_dropped_nonA1A2                   html  
    parse_dropped_nonBiallelic              html  
    parse_dropped_nonRef                    html  
    parse_flipped                           html  
    parse_genome_build                      html  
    parse_idStandard                        html  
    parse_logs                              html  
    parse_pval_large                        html  
    parse_pval_neg                          html  
    parse_pval_small                        html  
    parse_report                            html  
    preview_sumstats                        html  
    raw_ALSvcf                              html  
    raw_eduAttainOkbay                      html  
    read_header                             html  
    read_sumstats                           html  
    read_vcf                                html  
    remove_nonstandard_vcf_cols             html  
    report_summary                          html  
    select_api                              html  
    sort_coords                             html  
    standardise_sumstats_column_headers_crossplatform
                                            html  
    sumstatsColHeaders                      html  
    supported_suffixes                      html  
    to_GRanges                              html  
    to_VRanges                              html  
    validate_parameters                     html  
    vcf2df                                  html  
    write_sumstats                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MungeSumstats' as MungeSumstats_1.3.1.zip
* DONE (MungeSumstats)