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This page was generated on 2022-01-26 11:08:08 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4164
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4059
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4001
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4118
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for MineICA on riesling1


To the developers/maintainers of the MineICA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MineICA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1151/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MineICA 1.35.0  (landing page)
Anne Biton
Snapshot Date: 2022-01-25 13:55:17 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/MineICA
git_branch: master
git_last_commit: 7293f30
git_last_commit_date: 2021-10-26 12:06:44 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'BiocGenerics' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: MineICA
Version: 1.35.0
Command: rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MineICA.buildbin-libdir MineICA_1.35.0.tar.gz
StartedAt: 2022-01-25 21:08:15 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 21:09:28 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 72.9 seconds
RetCode: 0
Status:   OK  
PackageFile: MineICA_1.35.0.zip
PackageFileSize: 2.387 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MineICA.buildbin-libdir MineICA_1.35.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'MineICA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'sampleNames<-' in package 'MineICA'
** help
*** installing help indices
  converting help for package 'MineICA'
    finding HTML links ... done
    A                                       html  
    Alist                                   html  
    finding level-2 HTML links ... done

Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/Rtmp2PG1Oc/R.INSTALL2767c331333b1/MineICA/man/Alist.Rd:26: missing link 'class-IcaSet'
    Slist                                   html  
Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/Rtmp2PG1Oc/R.INSTALL2767c331333b1/MineICA/man/Slist.Rd:28: missing link 'class-IcaSet'
    addGenesToGoReport                      html  
    annot2Color                             html  
    annotCarbayo                            html  
    annotFeatures                           html  
    annotFeaturesComp                       html  
    annotFeaturesWithBiomaRt                html  
    annotInGene                             html  
    annotReciprocal                         html  
    buildIcaSet                             html  
    buildMineICAParams                      html  
    build_sortHeatmap                       html  
    class-IcaSet                            html  
Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/Rtmp2PG1Oc/R.INSTALL2767c331333b1/MineICA/man/class-IcaSet.Rd:321: missing link 'class-IcaSet'
    class-MineICAParams                     html  
    clusVarAnalysis                         html  
    clusterFastICARuns                      html  
    clusterSamplesByComp                    html  
    clusterSamplesByComp_multiple           html  
    compareAn                               html  
    compareAn2graphfile                     html  
    compareGenes                            html  
    cor2An                                  html  
    correl2Comp                             html  
    dat                                     html  
    dataCarbayo                             html  
    doEnrichment                            html  
    getComp                                 html  
Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/Rtmp2PG1Oc/R.INSTALL2767c331333b1/MineICA/man/getComp.Rd:33: missing link 'class-IcaSet'
    getProj                                 html  
    getSdExpr                               html  
    hgOver                                  html  
    hypergeoAn                              html  
    icaSetCarbayo                           html  
    icaSetKim                               html  
    icaSetRiester                           html  
    icaSetStransky                          html  
    indComp                                 html  
    mergeGostatsResults                     html  
    nbOccByGeneInComp                       html  
    nbOccInComp                             html  
    nbOccInComp_simple                      html  
    nodeAttrs                               html  
    plotAllMix                              html  
    plotCorGraph                            html  
    plotDens2classInComp_plotOnly           html  
    plotDensAllAnnotInAllComp               html  
    plotDensOneAnnotInAllComp               html  
    plotMclust                              html  
    plotMix                                 html  
    plotPosAnnotInComp                      html  
    plotPosOneAnnotInComp_ggplot            html  
    plotPosOneAnnotLevInComp_ggplot         html  
    plotPosSamplesInComp                    html  
    plot_heatmapsOnSel                      html  
    qualVarAnalysis                         html  
    quantVarAnalysis                        html  
    readA                                   html  
    readS                                   html  
    relativePath                            html  
    runAn                                   html  
    runCompareIcaSets                       html  
    runEnrich                               html  
    runICA                                  html  
    selectContrib                           html  
    selectFeatures_IQR                      html  
    selectWitnessGenes                      html  
    wilcoxOrKruskalOnA                      html  
    writeGenes                              html  
    writeGostatsHtmltable                   html  
    writeHtmlResTestsByAnnot                html  
    writeProjByComp                         html  
    writeRnkFiles                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MineICA' as MineICA_1.35.0.zip
* DONE (MineICA)