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This page was generated on 2023-09-21 11:40:56 -0400 (Thu, 21 Sep 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4654
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4388
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4402
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4391
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1141/2229HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MatrixRider 1.33.0  (landing page)
Elena Grassi
Snapshot Date: 2023-09-20 14:05:05 -0400 (Wed, 20 Sep 2023)
git_url: https://git.bioconductor.org/packages/MatrixRider
git_branch: devel
git_last_commit: e26bd36
git_last_commit_date: 2023-04-25 10:38:13 -0400 (Tue, 25 Apr 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

INSTALL results for MatrixRider on kunpeng2


To the developers/maintainers of the MatrixRider package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MatrixRider.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: MatrixRider
Version: 1.33.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL MatrixRider
StartedAt: 2023-09-20 19:32:08 -0000 (Wed, 20 Sep 2023)
EndedAt: 2023-09-20 19:33:04 -0000 (Wed, 20 Sep 2023)
EllapsedTime: 55.9 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL MatrixRider
###
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* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘MatrixRider’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c Biostring_stubs.c -o Biostring_stubs.o
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c CuTest.c -o CuTest.o
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c R_init_MatrixRider.c -o R_init_MatrixRider.o
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RunCuTest.c -o RunCuTest.o
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c matrix_rider.c -o matrix_rider.o
gcc -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o MatrixRider.so Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-MatrixRider/00new/MatrixRider/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MatrixRider)