Multiple platform build/check report for BioC 3.19 - BUILD results for MSstatsTMT on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"	4708
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences"	4446
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"	4471
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*
##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsTMT
###
##############################################################################
##############################################################################


* checking for file ‘MSstatsTMT/DESCRIPTION’ ... OK
* preparing ‘MSstatsTMT’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MSstatsTMT.Rmd’ using rmarkdown

 *** caught segfault ***
address (nil), cause 'unknown'

Traceback:
 1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind,     RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta,     u0)
 2: initializePtr()
 3: .Object$initialize(...)
 4: initialize(value, ...)
 5: initialize(value, ...)
 6: methods::new(def, ...)
 7: (new("refMethodDef", .Data = function (...) {    methods::new(def, ...)}, mayCall = c("methods", "new"), name = "new", refClassName = "refGeneratorSlot",     superClassMethod = ""))(Zt = new("dgCMatrix", i = c(0L, 20L, 35L, 2L, 20L, 35L, 3L, 20L, 35L, 1L, 20L, 35L, 1L, 20L, 35L, 0L, 20L, 35L, 2L, 20L, 35L, 3L, 20L, 35L, 0L, 21L, 35L, 2L, 21L, 35L, 3L, 21L, 35L, 1L, 21L, 35L, 1L, 21L, 35L, 0L, 21L, 35L, 2L, 21L, 35L, 3L, 21L, 35L, 0L, 22L, 35L, 2L, 22L, 35L, 3L, 22L, 35L, 1L, 22L, 35L, 1L, 22L, 35L, 0L, 22L, 35L, 2L, 22L, 35L, 3L, 22L, 35L, 7L, 23L, 36L, 5L, 23L, 36L, 4L, 23L, 36L, 6L, 23L, 36L, 6L, 23L, 36L, 7L, 23L, 36L, 5L, 23L, 36L, 4L, 23L, 36L, 7L, 24L, 36L, 5L, 24L, 36L, 4L, 24L, 36L, 6L, 24L, 36L, 6L, 24L, 36L, 7L, 24L, 36L, 5L, 24L, 36L, 4L, 24L, 36L, 7L, 25L, 36L, 5L, 25L, 36L, 4L, 25L, 36L, 6L, 25L, 36L, 6L, 25L, 36L, 7L, 25L, 36L, 5L, 25L, 36L, 4L, 25L, 36L, 10L, 26L, 37L, 8L, 26L, 37L, 9L, 26L, 37L, 11L, 26L, 37L, 8L, 26L, 37L, 9L, 26L, 37L, 11L, 26L, 37L, 10L, 26L, 37L, 10L, 27L, 37L, 8L, 27L, 37L, 9L, 27L, 37L, 11L, 27L, 37L, 8L, 27L, 37L, 9L, 27L, 37L, 11L, 27L, 37L, 10L, 27L, 37L, 10L, 28L, 37L, 8L, 28L, 37L, 9L, 28L, 37L, 11L, 28L, 37L, 8L, 28L, 37L, 9L, 28L, 37L, 11L, 28L, 37L, 10L, 28L, 37L, 13L, 29L, 38L, 15L, 29L, 38L, 14L, 29L, 38L, 12L, 29L, 38L, 15L, 29L, 38L, 14L, 29L, 38L, 12L, 29L, 38L, 13L, 29L, 38L, 13L, 30L, 38L, 15L, 30L, 38L, 14L, 30L, 38L, 12L, 30L, 38L, 15L, 30L, 38L, 14L, 30L, 38L, 12L, 30L, 38L, 13L, 30L, 38L, 13L, 31L, 38L, 15L, 31L, 38L, 14L, 31L, 38L, 12L, 31L, 38L, 15L, 31L, 38L, 14L, 31L, 38L, 12L, 31L, 38L, 13L, 31L, 38L, 16L, 32L, 39L, 18L, 32L, 39L, 19L, 32L, 39L, 17L, 32L, 39L, 17L, 32L, 39L, 16L, 32L, 39L, 18L, 32L, 39L, 19L, 32L, 39L, 16L, 33L, 39L, 18L, 33L, 39L, 19L, 33L, 39L, 17L, 33L, 39L, 17L, 33L, 39L, 16L, 33L, 39L, 18L, 33L, 39L, 19L, 33L, 39L, 16L, 34L, 39L, 18L, 34L, 39L, 19L, 34L, 39L, 17L, 34L, 39L, 17L, 34L, 39L, 16L, 34L, 39L, 18L, 34L, 39L, 19L, 34L, 39L), p = c(0L, 3L, 6L, 9L, 12L, 15L, 18L, 21L, 24L, 27L, 30L, 33L, 36L, 39L, 42L, 45L, 48L, 51L, 54L, 57L, 60L, 63L, 66L, 69L, 72L, 75L, 78L, 81L, 84L, 87L, 90L, 93L, 96L, 99L, 102L, 105L, 108L, 111L, 114L, 117L, 120L, 123L, 126L, 129L, 132L, 135L, 138L, 141L, 144L, 147L, 150L, 153L, 156L, 159L, 162L, 165L, 168L, 171L, 174L, 177L, 180L, 183L, 186L, 189L, 192L, 195L, 198L, 201L, 204L, 207L, 210L, 213L, 216L, 219L, 222L, 225L, 228L, 231L, 234L, 237L, 240L, 243L, 246L, 249L, 252L, 255L, 258L, 261L, 264L, 267L, 270L, 273L, 276L, 279L, 282L, 285L, 288L, 291L, 294L, 297L, 300L, 303L, 306L, 309L, 312L, 315L, 318L, 321L, 324L, 327L, 330L, 333L, 336L, 339L, 342L, 345L, 348L, 351L, 354L, 357L, 360L), Dim = c(40L, 120L), Dimnames = list(c("Mixture1_0.125", "Mixture1_0.5", "Mixture1_0.667", "Mixture1_1", "Mixture2_0.125", "Mixture2_0.5", "Mixture2_0.667", "Mixture2_1", "Mixture3_0.125", "Mixture3_0.5", "Mixture3_0.667", "Mixture3_1", "Mixture4_0.125", "Mixture4_0.5", "Mixture4_0.667", "Mixture4_1", "Mixture5_0.125", "Mixture5_0.5", "Mixture5_0.667", "Mixture5_1", "Mixture1:1", "Mixture1:2", "Mixture1:3", "Mixture2:1", "Mixture2:2", "Mixture2:3", "Mixture3:1", "Mixture3:2", "Mixture3:3", "Mixture4:1", "Mixture4:2", "Mixture4:3", "Mixture5:1", "Mixture5:2", "Mixture5:3", "Mixture1", "Mixture2", "Mixture3", "Mixture4", "Mixture5"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120")), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()),     theta = c(1, 1, 1), Lambdat = new("dgCMatrix", i = 0:39,         p = 0:40, Dim = c(40L, 40L), Dimnames = list(NULL, NULL),         x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1), factors = list()), Lind = c(1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L), n = 120L, X = c(1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0,     0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0,     0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 1,     0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 1,     0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0,     0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0,     0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1,     0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 1,     0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0,     1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0,     0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1,     0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0,     1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0,     0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0,     1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0,     0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0,     0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 0,     0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 1,     0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0,     0, 1))
 8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")],     n = nrow(X), list(X = X)))
 9: (function (fr, X, reTrms, REML = TRUE, start = NULL, verbose = 0,     control = lmerControl(), ...) {    p <- ncol(X)    rho <- new.env(parent = parent.env(environment()))    rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta",         "Lambdat", "Lind")], n = nrow(X), list(X = X)))    REMLpass <- if (REML)         p    else 0L    rho$resp <- if (missing(fr))         mkRespMod(REML = REMLpass, ...)    else mkRespMod(fr, REML = REMLpass)    pp <- resp <- NULL    rho$lmer_Deviance <- lmer_Deviance    devfun <- function(theta) .Call(lmer_Deviance, pp$ptr(),         resp$ptr(), as.double(theta))    environment(devfun) <- rho    if (is.null(start) && all(reTrms$cnms == "(Intercept)") &&         length(reTrms$flist) == length(reTrms$lower) && !is.null(y <- model.response(fr))) {        v <- sapply(reTrms$flist, function(f) var(ave(y, f)))        v.e <- var(y) - sum(v)        if (!is.na(v.e) && v.e > 0) {            v.rel <- v/v.e            if (all(v.rel >= reTrms$lower^2))                 rho$pp$setTheta(sqrt(v.rel))        }    }    if (length(rho$resp$y) > 0)         devfun(rho$pp$theta)    rho$lower <- reTrms$lower    devfun})(fr = list(Abundance = c(16.5981240067408, 16.5110582757449, 16.6517685351404, 16.7178298762783, 16.6719046124296, 16.5572887988767, 16.494481730482, 16.6595231832318, 16.5278476533993, 16.6087548745279, 16.6422215742024, 16.5060909262532, 16.6478017789209, 16.4859712533246, 16.5479137252186, 16.6135118193593, 16.597922048877, 16.5437863811447, 16.6318588123051, 16.5768081631917, 16.5126402401422, 16.6127211961285, 16.6474086709374, 16.583178602372, 16.7072343432572, 16.640280461957, 16.5351365875751, 16.6565836832881, 16.5568728240573, 16.6158576864981, 16.5433807013869, 16.5909893871506, 16.6237946798194, 16.6538993081779, 16.45604334395, 16.6419846925685, 16.6974332360658, 16.5755924183203, 16.6517145483469, 16.4306776611365, 16.594258141957, 16.680224905867, 16.7021224838771, 16.6972066363189, 16.6675786125849, 16.7271104729405, 16.6971595682434, 16.5998832169083, 16.5836484383228, 16.6198839813992, 16.6370877849492, 16.6187051113009, 16.6269697900013, 16.4158308286411, 16.2140570807683, 16.5557248064919, 16.4459874714479, 16.5561450962302, 16.5574567707276, 16.50296992997, 16.5710677831739, 16.5015888144652, 16.5403262023258, 16.5750269862666, 16.5264750853648, 16.6157176141321, 16.6472171002085, 16.6927892507181, 16.4201340034736, 16.6166905987261, 16.6420660882917, 16.6286682583759, 16.5984045114515, 16.503829765825, 16.4377447765499, 16.6352276913071, 16.5483502874874, 16.6192617162842, 16.5665881549071, 16.4823172143412, 16.4693261264621, 16.456885370227, 16.5003598314818, 16.4604219122362, 16.4235297682871, 16.310170865932, 16.2869816032604, 16.3583498143705, 16.462030373532, 16.342129324012, 16.6151149442133, 16.5464714350061, 16.5581975137967, 16.5954201283941, 16.4550549627702, 16.6579984406959, 16.5450715491084, 16.5437282336074, 16.6884949000644, 16.6095057233993, 16.5393404103124, 16.5968288887794, 16.588025281256, 16.4611023658489, 16.5901870831502, 16.6137583025933, 16.4938674923723, 16.5689565829522, 16.6460317667733, 16.6684208074425, 16.6019174846236, 16.4488410611863, 16.9037507327187, 16.6262849328484, 16.7253399217754, 16.7696641758872, 16.9684414668737, 16.705104264302, 16.7396594090209, 16.7549937788123), Mixture = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L), TechRepMixture = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), Group = c(1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 4L, 2L, 1L, 3L, 3L, 4L, 2L, 1L, 4L, 2L, 1L, 3L, 3L, 4L, 2L, 1L, 4L, 2L, 1L, 3L, 3L, 4L, 2L, 1L, 3L, 1L, 2L, 4L, 1L, 2L, 4L, 3L, 3L, 1L, 2L, 4L, 1L, 2L, 4L, 3L, 3L, 1L, 2L, 4L, 1L, 2L, 4L, 3L, 2L, 4L, 3L, 1L, 4L, 3L, 1L, 2L, 2L, 4L, 3L, 1L, 4L, 3L, 1L, 2L, 2L, 4L, 3L, 1L, 4L, 3L, 1L, 2L, 1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L), Subject = c(1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 8L, 6L, 5L, 7L, 7L, 8L, 6L, 5L, 8L, 6L, 5L, 7L, 7L, 8L, 6L, 5L, 8L, 6L, 5L, 7L, 7L, 8L, 6L, 5L, 11L, 9L, 10L, 12L, 9L, 10L, 12L, 11L, 11L, 9L, 10L, 12L, 9L, 10L, 12L, 11L, 11L, 9L, 10L, 12L, 9L, 10L, 12L, 11L, 14L, 16L, 15L, 13L, 16L, 15L, 13L, 14L, 14L, 16L, 15L, 13L, 16L, 15L, 13L, 14L, 14L, 16L, 15L, 13L, 16L, 15L, 13L, 14L, 17L, 19L, 20L, 18L, 18L, 17L, 19L, 20L, 17L, 19L, 20L, 18L, 18L, 17L, 19L, 20L, 17L, 19L, 20L, 18L, 18L, 17L, 19L, 20L)), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1), reTrms = list(Zt = new("dgCMatrix",     i = c(0L, 20L, 35L, 2L, 20L, 35L, 3L, 20L, 35L, 1L, 20L,     35L, 1L, 20L, 35L, 0L, 20L, 35L, 2L, 20L, 35L, 3L, 20L, 35L,     0L, 21L, 35L, 2L, 21L, 35L, 3L, 21L, 35L, 1L, 21L, 35L, 1L,     21L, 35L, 0L, 21L, 35L, 2L, 21L, 35L, 3L, 21L, 35L, 0L, 22L,     35L, 2L, 22L, 35L, 3L, 22L, 35L, 1L, 22L, 35L, 1L, 22L, 35L,     0L, 22L, 35L, 2L, 22L, 35L, 3L, 22L, 35L, 7L, 23L, 36L, 5L,     23L, 36L, 4L, 23L, 36L, 6L, 23L, 36L, 6L, 23L, 36L, 7L, 23L,     36L, 5L, 23L, 36L, 4L, 23L, 36L, 7L, 24L, 36L, 5L, 24L, 36L,     4L, 24L, 36L, 6L, 24L, 36L, 6L, 24L, 36L, 7L, 24L, 36L, 5L,     24L, 36L, 4L, 24L, 36L, 7L, 25L, 36L, 5L, 25L, 36L, 4L, 25L,     36L, 6L, 25L, 36L, 6L, 25L, 36L, 7L, 25L, 36L, 5L, 25L, 36L,     4L, 25L, 36L, 10L, 26L, 37L, 8L, 26L, 37L, 9L, 26L, 37L,     11L, 26L, 37L, 8L, 26L, 37L, 9L, 26L, 37L, 11L, 26L, 37L,     10L, 26L, 37L, 10L, 27L, 37L, 8L, 27L, 37L, 9L, 27L, 37L,     11L, 27L, 37L, 8L, 27L, 37L, 9L, 27L, 37L, 11L, 27L, 37L,     10L, 27L, 37L, 10L, 28L, 37L, 8L, 28L, 37L, 9L, 28L, 37L,     11L, 28L, 37L, 8L, 28L, 37L, 9L, 28L, 37L, 11L, 28L, 37L,     10L, 28L, 37L, 13L, 29L, 38L, 15L, 29L, 38L, 14L, 29L, 38L,     12L, 29L, 38L, 15L, 29L, 38L, 14L, 29L, 38L, 12L, 29L, 38L,     13L, 29L, 38L, 13L, 30L, 38L, 15L, 30L, 38L, 14L, 30L, 38L,     12L, 30L, 38L, 15L, 30L, 38L, 14L, 30L, 38L, 12L, 30L, 38L,     13L, 30L, 38L, 13L, 31L, 38L, 15L, 31L, 38L, 14L, 31L, 38L,     12L, 31L, 38L, 15L, 31L, 38L, 14L, 31L, 38L, 12L, 31L, 38L,     13L, 31L, 38L, 16L, 32L, 39L, 18L, 32L, 39L, 19L, 32L, 39L,     17L, 32L, 39L, 17L, 32L, 39L, 16L, 32L, 39L, 18L, 32L, 39L,     19L, 32L, 39L, 16L, 33L, 39L, 18L, 33L, 39L, 19L, 33L, 39L,     17L, 33L, 39L, 17L, 33L, 39L, 16L, 33L, 39L, 18L, 33L, 39L,     19L, 33L, 39L, 16L, 34L, 39L, 18L, 34L, 39L, 19L, 34L, 39L,     17L, 34L, 39L, 17L, 34L, 39L, 16L, 34L, 39L, 18L, 34L, 39L,     19L, 34L, 39L), p = c(0L, 3L, 6L, 9L, 12L, 15L, 18L, 21L,     24L, 27L, 30L, 33L, 36L, 39L, 42L, 45L, 48L, 51L, 54L, 57L,     60L, 63L, 66L, 69L, 72L, 75L, 78L, 81L, 84L, 87L, 90L, 93L,     96L, 99L, 102L, 105L, 108L, 111L, 114L, 117L, 120L, 123L,     126L, 129L, 132L, 135L, 138L, 141L, 144L, 147L, 150L, 153L,     156L, 159L, 162L, 165L, 168L, 171L, 174L, 177L, 180L, 183L,     186L, 189L, 192L, 195L, 198L, 201L, 204L, 207L, 210L, 213L,     216L, 219L, 222L, 225L, 228L, 231L, 234L, 237L, 240L, 243L,     246L, 249L, 252L, 255L, 258L, 261L, 264L, 267L, 270L, 273L,     276L, 279L, 282L, 285L, 288L, 291L, 294L, 297L, 300L, 303L,     306L, 309L, 312L, 315L, 318L, 321L, 324L, 327L, 330L, 333L,     336L, 339L, 342L, 345L, 348L, 351L, 354L, 357L, 360L), Dim = c(40L,     120L), Dimnames = list(c("Mixture1_0.125", "Mixture1_0.5",     "Mixture1_0.667", "Mixture1_1", "Mixture2_0.125", "Mixture2_0.5",     "Mixture2_0.667", "Mixture2_1", "Mixture3_0.125", "Mixture3_0.5",     "Mixture3_0.667", "Mixture3_1", "Mixture4_0.125", "Mixture4_0.5",     "Mixture4_0.667", "Mixture4_1", "Mixture5_0.125", "Mixture5_0.5",     "Mixture5_0.667", "Mixture5_1", "Mixture1:1", "Mixture1:2",     "Mixture1:3", "Mixture2:1", "Mixture2:2", "Mixture2:3", "Mixture3:1",     "Mixture3:2", "Mixture3:3", "Mixture4:1", "Mixture4:2", "Mixture4:3",     "Mixture5:1", "Mixture5:2", "Mixture5:3", "Mixture1", "Mixture2",     "Mixture3", "Mixture4", "Mixture5"), c("1", "2", "3", "4",     "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15",     "16", "17", "18", "19", "20", "21", "22", "23", "24", "25",     "26", "27", "28", "29", "30", "31", "32", "33", "34", "35",     "36", "37", "38", "39", "40", "41", "42", "43", "44", "45",     "46", "47", "48", "49", "50", "51", "52", "53", "54", "55",     "56", "57", "58", "59", "60", "61", "62", "63", "64", "65",     "66", "67", "68", "69", "70", "71", "72", "73", "74", "75",     "76", "77", "78", "79", "80", "81", "82", "83", "84", "85",     "86", "87", "88", "89", "90", "91", "92", "93", "94", "95",     "96", "97", "98", "99", "100", "101", "102", "103", "104",     "105", "106", "107", "108", "109", "110", "111", "112", "113",     "114", "115", "116", "117", "118", "119", "120")), x = c(1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()),     theta = c(1, 1, 1), Lind = c(1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L,     2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L,     3L, 3L, 3L), Gp = c(0L, 20L, 35L, 40L), lower = c(0, 0, 0    ), Lambdat = new("dgCMatrix", i = 0:39, p = 0:40, Dim = c(40L,     40L), Dimnames = list(NULL, NULL), x = c(1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()),     flist = list(Subject = c(1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L,     1L, 3L, 4L, 2L, 2L, 1L, 3L, 4L, 1L, 3L, 4L, 2L, 2L, 1L, 3L,     4L, 8L, 6L, 5L, 7L, 7L, 8L, 6L, 5L, 8L, 6L, 5L, 7L, 7L, 8L,     6L, 5L, 8L, 6L, 5L, 7L, 7L, 8L, 6L, 5L, 11L, 9L, 10L, 12L,     9L, 10L, 12L, 11L, 11L, 9L, 10L, 12L, 9L, 10L, 12L, 11L,     11L, 9L, 10L, 12L, 9L, 10L, 12L, 11L, 14L, 16L, 15L, 13L,     16L, 15L, 13L, 14L, 14L, 16L, 15L, 13L, 16L, 15L, 13L, 14L,     14L, 16L, 15L, 13L, 16L, 15L, 13L, 14L, 17L, 19L, 20L, 18L,     18L, 17L, 19L, 20L, 17L, 19L, 20L, 18L, 18L, 17L, 19L, 20L,     17L, 19L, 20L, 18L, 18L, 17L, 19L, 20L), `Mixture:TechRepMixture` = c(1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L, 4L,     4L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 6L,     6L, 6L, 7L, 7L, 7L, 7L, 7L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L,     8L, 8L, 8L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 10L, 10L, 10L,     10L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 11L, 11L, 11L,     11L, 12L, 12L, 12L, 12L, 12L, 12L, 12L, 12L, 13L, 13L, 13L,     13L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 14L, 14L,     14L, 15L, 15L, 15L, 15L, 15L, 15L, 15L, 15L), Mixture = c(1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,     3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L,     4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L,     4L, 4L, 4L, 4L, 4L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L,     5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L)),     cnms = list(Subject = "(Intercept)", `Mixture:TechRepMixture` = "(Intercept)",         Mixture = "(Intercept)"), Ztlist = list(`1 | Subject` = new("dgCMatrix",         i = c(0L, 2L, 3L, 1L, 1L, 0L, 2L, 3L, 0L, 2L, 3L, 1L,         1L, 0L, 2L, 3L, 0L, 2L, 3L, 1L, 1L, 0L, 2L, 3L, 7L, 5L,         4L, 6L, 6L, 7L, 5L, 4L, 7L, 5L, 4L, 6L, 6L, 7L, 5L, 4L,         7L, 5L, 4L, 6L, 6L, 7L, 5L, 4L, 10L, 8L, 9L, 11L, 8L,         9L, 11L, 10L, 10L, 8L, 9L, 11L, 8L, 9L, 11L, 10L, 10L,         8L, 9L, 11L, 8L, 9L, 11L, 10L, 13L, 15L, 14L, 12L, 15L,         14L, 12L, 13L, 13L, 15L, 14L, 12L, 15L, 14L, 12L, 13L,         13L, 15L, 14L, 12L, 15L, 14L, 12L, 13L, 16L, 18L, 19L,         17L, 17L, 16L, 18L, 19L, 16L, 18L, 19L, 17L, 17L, 16L,         18L, 19L, 16L, 18L, 19L, 17L, 17L, 16L, 18L, 19L), p = 0:120,         Dim = c(20L, 120L), Dimnames = list(c("Mixture1_0.125",         "Mixture1_0.5", "Mixture1_0.667", "Mixture1_1", "Mixture2_0.125",         "Mixture2_0.5", "Mixture2_0.667", "Mixture2_1", "Mixture3_0.125",         "Mixture3_0.5", "Mixture3_0.667", "Mixture3_1", "Mixture4_0.125",         "Mixture4_0.5", "Mixture4_0.667", "Mixture4_1", "Mixture5_0.125",         "Mixture5_0.5", "Mixture5_0.667", "Mixture5_1"), c("1",         "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12",         "13", "14", "15", "16", "17", "18", "19", "20", "21",         "22", "23", "24", "25", "26", "27", "28", "29", "30",         "31", "32", "33", "34", "35", "36", "37", "38", "39",         "40", "41", "42", "43", "44", "45", "46", "47", "48",         "49", "50", "51", "52", "53", "54", "55", "56", "57",         "58", "59", "60", "61", "62", "63", "64", "65", "66",         "67", "68", "69", "70", "71", "72", "73", "74", "75",         "76", "77", "78", "79", "80", "81", "82", "83", "84",         "85", "86", "87", "88", "89", "90", "91", "92", "93",         "94", "95", "96", "97", "98", "99", "100", "101", "102",         "103", "104", "105", "106", "107", "108", "109", "110",         "111", "112", "113", "114", "115", "116", "117", "118",         "119", "120")), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1), factors = list()), `1 | Mixture:TechRepMixture` = new("dgCMatrix",         i = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L,         1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L,         3L, 3L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L,         5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 6L,         6L, 6L, 7L, 7L, 7L, 7L, 7L, 7L, 7L, 7L, 8L, 8L, 8L, 8L,         8L, 8L, 8L, 8L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 10L,         10L, 10L, 10L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L,         11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 12L, 12L, 12L,         12L, 13L, 13L, 13L, 13L, 13L, 13L, 13L, 13L, 14L, 14L,         14L, 14L, 14L, 14L, 14L, 14L), p = 0:120, Dim = c(15L,         120L), Dimnames = list(c("Mixture1:1", "Mixture1:2",         "Mixture1:3", "Mixture2:1", "Mixture2:2", "Mixture2:3",         "Mixture3:1", "Mixture3:2", "Mixture3:3", "Mixture4:1",         "Mixture4:2", "Mixture4:3", "Mixture5:1", "Mixture5:2",         "Mixture5:3"), c("1", "2", "3", "4", "5", "6", "7", "8",         "9", "10", "11", "12", "13", "14", "15", "16", "17",         "18", "19", "20", "21", "22", "23", "24", "25", "26",         "27", "28", "29", "30", "31", "32", "33", "34", "35",         "36", "37", "38", "39", "40", "41", "42", "43", "44",         "45", "46", "47", "48", "49", "50", "51", "52", "53",         "54", "55", "56", "57", "58", "59", "60", "61", "62",         "63", "64", "65", "66", "67", "68", "69", "70", "71",         "72", "73", "74", "75", "76", "77", "78", "79", "80",         "81", "82", "83", "84", "85", "86", "87", "88", "89",         "90", "91", "92", "93", "94", "95", "96", "97", "98",         "99", "100", "101", "102", "103", "104", "105", "106",         "107", "108", "109", "110", "111", "112", "113", "114",         "115", "116", "117", "118", "119", "120")), x = c(1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()),         `1 | Mixture` = new("dgCMatrix", i = c(0L, 0L, 0L, 0L,         0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,         0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,         1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,         1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,         2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L,         3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,         3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L,         4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L,         4L, 4L, 4L, 4L), p = 0:120, Dim = c(5L, 120L), Dimnames = list(            c("Mixture1", "Mixture2", "Mixture3", "Mixture4",             "Mixture5"), c("1", "2", "3", "4", "5", "6", "7",             "8", "9", "10", "11", "12", "13", "14", "15", "16",             "17", "18", "19", "20", "21", "22", "23", "24", "25",             "26", "27", "28", "29", "30", "31", "32", "33", "34",             "35", "36", "37", "38", "39", "40", "41", "42", "43",             "44", "45", "46", "47", "48", "49", "50", "51", "52",             "53", "54", "55", "56", "57", "58", "59", "60", "61",             "62", "63", "64", "65", "66", "67", "68", "69", "70",             "71", "72", "73", "74", "75", "76", "77", "78", "79",             "80", "81", "82", "83", "84", "85", "86", "87", "88",             "89", "90", "91", "92", "93", "94", "95", "96", "97",             "98", "99", "100", "101", "102", "103", "104", "105",             "106", "107", "108", "109", "110", "111", "112",             "113", "114", "115", "116", "117", "118", "119",             "120")), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1),             factors = list())), nl = c(Subject = 20L, `Mixture:TechRepMixture` = 15L,     Mixture = 5L)), REML = TRUE, wmsgs = character(0), start = NULL,     verbose = 0L, control = list(optimizer = "nloptwrap", restart_edge = TRUE,         boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE,         checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop",             check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop",             check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols",             check.scaleX = "warning", check.formula.LHS = "stop"),         checkConv = list(check.conv.grad = list(action = "warning",             tol = 0.002, relTol = NULL), check.conv.singular = list(            action = "message", tol = 1e-04), check.conv.hess = list(            action = "warning", tol = 1e-06)), optCtrl = list()))
10: do.call(mkLmerDevfun, c(lmod, list(start = start, verbose = verbose,     control = control)))
11: lme4::lmer(formula = Abundance ~ 1 + (1 | Mixture) + (1 | Mixture:TechRepMixture) +     Group + (1 | Subject), data = data)
12: eval(expr, p)
13: eval(expr, p)
14: eval.parent(mc)
15: lmerTest::lmer(Abundance ~ 1 + (1 | Mixture) + (1 | Mixture:TechRepMixture) +     Group + (1 | Subject), data = data)
16: doTryCatch(return(expr), name, parentenv, handler)
17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
18: tryCatchList(expr, classes, parentenv, handlers)
19: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))             call <- sys.call(-4L)        dcall <- deparse(call, nlines = 1L)        prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        sm <- strsplit(conditionMessage(e), "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],                 type = "b")        if (w > LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")    .Internal(seterrmessage(msg[1L]))    if (!silent && isTRUE(getOption("show.error.messages"))) {        cat(msg, file = outFile)        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error", condition = e))})
20: try(lmerTest::lmer(Abundance ~ 1 + (1 | Mixture) + (1 | Mixture:TechRepMixture) +     Group + (1 | Subject), data = data), TRUE)
21: withCallingHandlers(expr, message = function(c) if (inherits(c,     classes)) tryInvokeRestart("muffleMessage"))
22: suppressMessages(try(lmerTest::lmer(Abundance ~ 1 + (1 | Mixture) +     (1 | Mixture:TechRepMixture) + Group + (1 | Subject), data = data),     TRUE))
23: fit_Mix_TechRep_Group_Sub_model(single_protein)
24: .fitModelTMT(single_protein, has_single_subject, has_techreps,     has_biomixtures, has_single_run, has_Repeated_Measures)
25: MSstatsComparisonModelSingleTMT(single_protein, protein)
26: MSstatsFitComparisonModelsTMT(summarized)
27: groupComparisonTMT(quant.msstats, moderated = TRUE)
28: eval(expr, envir, enclos)
29: eval(expr, envir, enclos)
30: eval_with_user_handlers(expr, envir, enclos, user_handlers)
31: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
32: withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)
33: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler))
34: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)))
35: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,     debug = debug, last = i == length(out), use_try = stop_on_error !=         2L, keep_warning = keep_warning, keep_message = keep_message,     log_echo = log_echo, log_warning = log_warning, output_handler = output_handler,     include_timing = include_timing)
36: evaluate::evaluate(...)
37: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
38: in_dir(input_dir(), expr)
39: in_input_dir(evaluate(code, envir = env, new_device = FALSE,     keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
40: eng_r(options)
41: block_exec(params)
42: call_block(x)
43: process_group.block(group)
44: process_group(group)
45: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
46: withCallingHandlers(expr, error = function(e) {    loc = paste0(current_lines(), label, sprintf(" (%s)", knit_concord$get("infile")))    message(one_string(handler(e, loc)))})
47: handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)),     function(e, loc) {        setwd(wd)        write_utf8(res, output %n% stdout())        paste0("\nQuitting from lines ", loc)    }, if (labels[i] != "") sprintf(" [%s]", labels[i]))
48: process_file(text, output)
49: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
50: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
51: vweave_rmarkdown(...)
52: engine$weave(file, quiet = quiet, encoding = enc)
53: doTryCatch(return(expr), name, parentenv, handler)
54: tryCatchOne(expr, names, parentenv, handlers[[1L]])
55: tryCatchList(expr, classes, parentenv, handlers)
56: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
57: tools::buildVignettes(dir = ".", tangle = TRUE)
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault (core dumped)
BUILD results for MSstatsTMT on nebbiolo1

Summary

Command output
