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This page was generated on 2022-01-25 11:07:47 -0500 (Tue, 25 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4164
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4059
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4001
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4118
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for MSstatsPTM on riesling1


To the developers/maintainers of the MSstatsPTM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsPTM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1226/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSstatsPTM 1.5.2  (landing page)
Devon Kohler
Snapshot Date: 2022-01-24 13:55:18 -0500 (Mon, 24 Jan 2022)
git_url: https://git.bioconductor.org/packages/MSstatsPTM
git_branch: master
git_last_commit: e2ca4fa
git_last_commit_date: 2021-12-21 10:38:27 -0500 (Tue, 21 Dec 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'MSstatsTMT' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'MSstatsTMT' which is not available

Summary

Package: MSstatsPTM
Version: 1.5.2
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MSstatsPTM
StartedAt: 2022-01-24 15:39:00 -0500 (Mon, 24 Jan 2022)
EndedAt: 2022-01-24 15:39:51 -0500 (Mon, 24 Jan 2022)
EllapsedTime: 51.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MSstatsPTM
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MSstatsPTM' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c model_adjustment.cpp -o model_adjustment.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsPTM.dll tmp.def RcppExports.o model_adjustment.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MSstatsPTM/00new/MSstatsPTM/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSstatsPTM'
    finding HTML links ... done
    MSstatsPTM                              html  
    MaxQtoMSstatsPTMFormat                  html  
    ProgenesistoMSstatsPTMFormat            html  
    SpectronauttoMSstatsPTMFormat           html  
    annotSite                               html  
    dataProcessPlotsPTM                     html  
    dataSummarizationPTM                    html  
    dataSummarizationPTM_TMT                html  
    groupComparisonPTM                      html  
    groupComparisonPlotsPTM                 html  
    locateMod                               html  
    locatePTM                               html  
    raw.input                               html  
    raw.input.tmt                           html  
    summary.data                            html  
    summary.data.tmt                        html  
    tidyFasta                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MSstatsPTM)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'GeneRegionScan' is missing or broken
 done