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This page was generated on 2022-06-24 11:06:42 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MACPET on palomino4


To the developers/maintainers of the MACPET package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACPET.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1044/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MACPET 1.17.1  (landing page)
Ioannis Vardaxis
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/MACPET
git_branch: master
git_last_commit: feb02ef
git_last_commit_date: 2022-05-10 11:49:26 -0400 (Tue, 10 May 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.2.1 Monterey / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: MACPET
Version: 1.17.1
Command: chmod a+r MACPET -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MACPET
StartedAt: 2022-06-23 19:23:54 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 19:24:10 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 16.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: MACPET_1.17.1.tar.gz
PackageFileSize: 844.5 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r MACPET -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MACPET
###
##############################################################################
##############################################################################


* checking for file 'MACPET/DESCRIPTION' ... OK
* preparing 'MACPET':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'MACPET' ...
** using staged installation
** libs
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/bigmemory/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/bigmemory/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Stage_0_FastqFilteringSubFunctions.cpp -o Stage_0_FastqFilteringSubFunctions.o
Stage_0_FastqFilteringSubFunctions.cpp: In function 'SEXPREC* FilterFastqYield_fun_Rcpp(int&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::string&, std::string&, int&, int&, int&)':
Stage_0_FastqFilteringSubFunctions.cpp:55:36: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   55 |         if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
      |            ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
Stage_0_FastqFilteringSubFunctions.cpp:55:66: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   55 |         if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
      |                                          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/bigmemory/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Stage_3_PeakFinderSubFunctions.cpp -o Stage_3_PeakFinderSubFunctions.o
Stage_3_PeakFinderSubFunctions.cpp: In function 'void Mstep2D_Rcpp(Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, const int&, const int&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericMatrix&, const NumericMatrix&)':
Stage_3_PeakFinderSubFunctions.cpp:1146:76: error: 'DOUBLE_EPS' was not declared in this scope
 1146 |             double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
      |                                                                            ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp: In function 'void NR_lambdax_g_Rcpp(double&, const double&, const double&, const double&)':
Stage_3_PeakFinderSubFunctions.cpp:1217:45: error: 'DOUBLE_EPS' was not declared in this scope
 1217 |         if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
      |                                             ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1218:50: error: 'DOUBLE_EPS' was not declared in this scope
 1218 |         if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
      |                                                  ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp: In function 'void NR_lambday_g_Rcpp(double&, const double&, const double&, const double&)':
Stage_3_PeakFinderSubFunctions.cpp:1257:48: error: 'DOUBLE_EPS' was not declared in this scope
 1257 |         if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
      |                                                ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1258:44: error: 'DOUBLE_EPS' was not declared in this scope
 1258 |         if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
      |                                            ^~~~~~~~~~
make: *** [F:/biocbuild/bbs-3.16-bioc/R/etc/x64/Makeconf:260: Stage_3_PeakFinderSubFunctions.o] Error 1
ERROR: compilation failed for package 'MACPET'
* removing 'F:/biocbuild/bbs-3.16-bioc/tmpdir/RtmpohLhbv/Rinst44cc3346964/MACPET'
      -----------------------------------
ERROR: package installation failed