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This page was generated on 2022-06-24 11:08:06 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MACPET on lconway


To the developers/maintainers of the MACPET package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACPET.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1044/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MACPET 1.17.1  (landing page)
Ioannis Vardaxis
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/MACPET
git_branch: master
git_last_commit: feb02ef
git_last_commit_date: 2022-05-10 11:49:26 -0400 (Tue, 10 May 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.2.1 Monterey / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: MACPET
Version: 1.17.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MACPET
StartedAt: 2022-06-23 16:56:25 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 16:56:38 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 13.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MACPET
###
##############################################################################
##############################################################################


* checking for file ‘MACPET/DESCRIPTION’ ... OK
* preparing ‘MACPET’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘MACPET’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Stage_0_FastqFilteringSubFunctions.cpp -o Stage_0_FastqFilteringSubFunctions.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Stage_3_PeakFinderSubFunctions.cpp -o Stage_3_PeakFinderSubFunctions.o
Stage_3_PeakFinderSubFunctions.cpp:329:9: warning: variable 'UDeps' set but not used [-Wunused-but-set-variable]
    int UDeps=0,UMinInd=0,DMinInd=0,ValidPairs=0;//the total U and D which are higher than eps,
        ^
Stage_3_PeakFinderSubFunctions.cpp:1146:76: error: use of undeclared identifier 'DOUBLE_EPS'
            double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
                                                                           ^
Stage_3_PeakFinderSubFunctions.cpp:1149:43: error: use of undeclared identifier 'DOUBLE_EPS'
            double k_g=std::max(std::sqrt(DOUBLE_EPS),Ak_g*(Bk_g-Ck_g));
                                          ^
Stage_3_PeakFinderSubFunctions.cpp:1153:75: error: use of undeclared identifier 'DOUBLE_EPS'
            my_g[g-1]=Bk_g+std::min(B_my_g[g-1]/C_my_g[g-1],1.0-std::sqrt(DOUBLE_EPS))*k_g;
                                                                          ^
Stage_3_PeakFinderSubFunctions.cpp:1217:45: error: use of undeclared identifier 'DOUBLE_EPS'
        if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
                                            ^
Stage_3_PeakFinderSubFunctions.cpp:1218:50: error: use of undeclared identifier 'DOUBLE_EPS'
        if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
                                                 ^
Stage_3_PeakFinderSubFunctions.cpp:1257:48: error: use of undeclared identifier 'DOUBLE_EPS'
        if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
                                               ^
Stage_3_PeakFinderSubFunctions.cpp:1258:44: error: use of undeclared identifier 'DOUBLE_EPS'
        if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
                                           ^
1 warning and 7 errors generated.
make: *** [Stage_3_PeakFinderSubFunctions.o] Error 1
ERROR: compilation failed for package ‘MACPET’
* removing ‘/private/tmp/RtmpgcKd0V/Rinst13cad23bfe32d/MACPET’
      -----------------------------------
ERROR: package installation failed