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INSTALL report for InPAS on tokay1

This page was generated on 2020-08-07 12:05:57 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE InPAS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 866/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
InPAS 1.21.0
Jianhong Ou
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/InPAS
Branch: master
Last Commit: 54b29cc
Last Changed Date: 2020-04-27 14:47:33 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: InPAS
Version: 1.21.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/InPAS_1.21.0.tar.gz && rm -rf InPAS.buildbin-libdir && mkdir InPAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InPAS.buildbin-libdir InPAS_1.21.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL InPAS_1.21.0.zip && rm InPAS_1.21.0.tar.gz InPAS_1.21.0.zip
StartedAt: 2020-08-06 18:52:26 -0400 (Thu, 06 Aug 2020)
EndedAt: 2020-08-06 18:53:54 -0400 (Thu, 06 Aug 2020)
EllapsedTime: 87.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/InPAS_1.21.0.tar.gz && rm -rf InPAS.buildbin-libdir && mkdir InPAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InPAS.buildbin-libdir InPAS_1.21.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL InPAS_1.21.0.zip && rm InPAS_1.21.0.tar.gz InPAS_1.21.0.zip
###
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install for i386

* installing *source* package 'InPAS' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'InPAS'
    finding HTML links ... done
    CPsite_estimation                       html  
    CPsites                                 html  
    InPAS-package                           html  
    PAscore                                 html  
    PAscore2                                html  
    UTR3TotalCoverage                       html  
    UTR3eSet                                html  
    UTR3usage                               html  
    covThreshold                            html  
    coverageFromBedGraph                    html  
    coverageRate                            html  
    depthWeight                             html  
    distalAdj                               html  
    filterRes                               html  
    fisher.exact.test                       html  
    get.regions.coverage                    html  
    getCov                                  html  
    getUTR3eSet                             html  
    getUTR3region                           html  
    inPAS                                   html  
    lastCDSusage                            html  
    limmaAnalyze                            html  
    optimalSegmentation                     html  
    polishCPs                               html  
    prepare4GSEA                            html  
    proximalAdj                             html  
    proximalAdjByCleanUpdTSeq               html  
    proximalAdjByPWM                        html  
    removeUTR3__UTR3                        html  
    searchDistalCPs                         html  
    searchProximalCPs                       html  
    seqLen                                  html  
    singleGroupAnalyze                      html  
    singleSampleAnalyze                     html  
    finding level-2 HTML links ... done

    sortGR                                  html  
    testUsage                               html  
    totalCoverage                           html  
    trimSeqnames                            html  
    usage4plot                              html  
    utr3.danRer10                           html  
    utr3.hg19                               html  
    utr3.mm10                               html  
    utr3Annotation                          html  
    utr3UsageEstimation                     html  
    valley                                  html  
    zScoreThrethold                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'InPAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'InPAS' as InPAS_1.21.0.zip
* DONE (InPAS)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'InPAS' successfully unpacked and MD5 sums checked