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This page was generated on 2023-03-24 11:06:01 -0400 (Fri, 24 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4546
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4307
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4299
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for HiContacts on palomino3


To the developers/maintainers of the HiContacts package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiContacts.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 916/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiContacts 1.1.2  (landing page)
Jacques Serizay
Snapshot Date: 2023-03-23 14:00:15 -0400 (Thu, 23 Mar 2023)
git_url: https://git.bioconductor.org/packages/HiContacts
git_branch: devel
git_last_commit: f9cca25
git_last_commit_date: 2023-03-12 16:56:27 -0400 (Sun, 12 Mar 2023)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HiContacts
Version: 1.1.2
Command: chmod a+r HiContacts -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HiContacts
StartedAt: 2023-03-23 19:33:07 -0400 (Thu, 23 Mar 2023)
EndedAt: 2023-03-23 19:39:05 -0400 (Thu, 23 Mar 2023)
EllapsedTime: 357.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r HiContacts -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HiContacts
###
##############################################################################
##############################################################################


* checking for file 'HiContacts/DESCRIPTION' ... OK
* preparing 'HiContacts':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'HiContacts.Rmd' using rmarkdown
Warning in .Internal(gc(verbose, reset, full)) :
  closing unused connection 4 (F:/biocbuild/ExperimentHub_cache/4a88bda5b31_7751)
Quitting from lines 175-198 (HiContacts.Rmd) 
Error: processing vignette 'HiContacts.Rmd' failed with diagnostics:
BiocParallel errors
  2 remote errors, element index: 1, 2
  0 unevaluated and other errors
  first remote error:
Error in eval(expr, p): object 'genome' not found

--- failed re-building 'HiContacts.Rmd'

SUMMARY: processing the following file failed:
  'HiContacts.Rmd'

Error: Vignette re-building failed.
Execution halted