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This page was generated on 2022-01-25 11:07:27 -0500 (Tue, 25 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4164
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4059
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4001
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4118
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for HiCBricks on riesling1


To the developers/maintainers of the HiCBricks package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 864/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCBricks 1.13.2  (landing page)
Koustav Pal
Snapshot Date: 2022-01-24 13:55:18 -0500 (Mon, 24 Jan 2022)
git_url: https://git.bioconductor.org/packages/HiCBricks
git_branch: master
git_last_commit: 2a085ec
git_last_commit_date: 2022-01-01 07:34:42 -0500 (Sat, 01 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'GenomeInfoDb' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HiCBricks
Version: 1.13.2
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HiCBricks
StartedAt: 2022-01-24 15:53:07 -0500 (Mon, 24 Jan 2022)
EndedAt: 2022-01-24 15:54:23 -0500 (Mon, 24 Jan 2022)
EllapsedTime: 75.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HiCBricks
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'HiCBricks' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HiCBricks'
    finding HTML links ... done
    BrickContainer_change_experiment_name   html  
    BrickContainer_change_output_directory
                                            html  
    BrickContainer_get_path_to_file         html  
    BrickContainer_list_chromosomes         html  
    BrickContainer_list_experiment_name     html  
    BrickContainer_list_files               html  
    BrickContainer_list_output_directory    html  
    BrickContainer_list_resolutions         html  
    BrickContainer_unlink_resolution        html  
    Brick_add_ranges                        html  
    Brick_call_compartments                 html  
    Brick_export_to_sparse                  html  
    Brick_fetch_range_index                 html  
    Brick_fetch_row_vector                  html  
    Brick_get_bintable                      html  
    Brick_get_chrominfo                     html  
    Brick_get_entire_matrix                 html  
    Brick_get_matrix                        html  
    Brick_get_matrix_mcols                  html  
    Brick_get_matrix_within_coords          html  
    Brick_get_ranges                        html  
    Brick_get_values_by_distance            html  
    Brick_get_vector_values                 html  
    Brick_list_matrices                     html  
    Brick_list_matrix_mcols                 html  
    Brick_list_mcool_normalisations         html  
    Brick_list_mcool_resolutions            html  
    Brick_list_rangekeys                    html  
    Brick_list_ranges_mcols                 html  
    Brick_load_cis_matrix_till_distance     html  
    Brick_load_data_from_mcool              html  
    Brick_load_data_from_sparse             html  
    Brick_load_matrix                       html  
    Brick_local_score_differentiator        html  
    Brick_make_ranges                       html  
    Brick_matrix_dimensions                 html  
    Brick_matrix_exists                     html  
    Brick_matrix_filename                   html  
    Brick_matrix_isdone                     html  
    Brick_matrix_issparse                   html  
    Brick_matrix_maxdist                    html  
    Brick_matrix_minmax                     html  
    Brick_mcool_normalisation_exists        html  
    Brick_rangekey_exists                   html  
    Brick_return_region_position            html  
    Brick_vizart_plot_heatmap               html  
    Create_many_Bricks                      html  
    Create_many_Bricks_from_mcool           html  
    HiCBricks                               html  
    load_BrickContainer                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiCBricks)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'hca' is missing or broken
 done