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This page was generated on 2022-01-24 11:07:27 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for Glimma on riesling1


To the developers/maintainers of the Glimma package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Glimma.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 785/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Glimma 2.5.2  (landing page)
Shian Su
Snapshot Date: 2022-01-23 13:55:15 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/Glimma
git_branch: master
git_last_commit: 10b88d6
git_last_commit_date: 2022-01-14 00:41:40 -0500 (Fri, 14 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Glimma
Version: 2.5.2
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Glimma
StartedAt: 2022-01-23 15:56:30 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 15:57:30 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 60.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Glimma
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'Glimma' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Glimma'
    finding HTML links ... done
    arraydata                               html  
    as.hexcol                               html  
    buildXYData                             html  
    extractGroups                           html  
    glBar                                   html  
    glBar.default                           html  
    glMDPlot.DESeqDataSet                   html  
    glMDPlot.DESeqResults                   html  
    glMDPlot.DGEExact                       html  
    glMDPlot.DGELRT                         html  
    glMDPlot.MArrayLM                       html  
    glMDPlot                                html  
    glMDPlot.default                        html  
    glMDRmd                                 html  
    glMDSPlot.DESeqDataSet                  html  
    glMDSPlot.DGEList                       html  
    glMDSPlot                               html  
    glMDSPlot.default                       html  
    glScatter                               html  
    glScatter.default                       html  
    glTable                                 html  
    glXYPlot                                html  
    glimma                                  html  
    glimmaMA.DESeqDataSet                   html  
    glimmaMA.DGEExact                       html  
    glimmaMA.DGELRT                         html  
    glimmaMA.MArrayLM                       html  
    glimmaMA                                html  
    finding level-2 HTML links ... done

    glimmaMDS.DESeqDataSet                  html  
    glimmaMDS.DGEList                       html  
    glimmaMDS                               html  
    glimmaMDS.default                       html  
    glimmaVolcano.DESeqDataSet              html  
    glimmaVolcano.DGEExact                  html  
    glimmaVolcano.DGELRT                    html  
    glimmaVolcano.MArrayLM                  html  
    glimmaVolcano                           html  
    glimmaXY                                html  
    glimmaXYWidget                          html  
    glimma_plot                             html  
    gllink                                  html  
    gltablink                               html  
    is.hex                                  html  
    lymphomaRNAseq                          html  
    makeJson                                html  
    makeJson.data.frame                     html  
    makeJson.jschart                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Glimma)
Making 'packages.html' ... done